Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HX0037_RS01320 Genome accession   NZ_CP139782
Coordinates   370992..373040 (-) Length   682 a.a.
NCBI ID   WP_094246945.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 365992..378040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS01290 rncS 366396..367145 (-) 750 WP_003154303.1 ribonuclease III -
  HX0037_RS01295 acpP 367284..367517 (-) 234 WP_003154310.1 acyl carrier protein -
  HX0037_RS01300 fabG 367602..368342 (-) 741 WP_094246944.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  HX0037_RS01305 fabD 368335..369288 (-) 954 WP_003154316.1 ACP S-malonyltransferase -
  HX0037_RS01310 plsX 369307..370305 (-) 999 WP_007409758.1 phosphate acyltransferase PlsX -
  HX0037_RS01315 fapR 370319..370885 (-) 567 WP_003154320.1 transcription factor FapR -
  HX0037_RS01320 recG 370992..373040 (-) 2049 WP_094246945.1 ATP-dependent DNA helicase RecG Machinery gene
  HX0037_RS01325 sdaAA 373018..373920 (-) 903 WP_094246946.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  HX0037_RS01330 sdaAB 373941..374603 (-) 663 WP_094246947.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  HX0037_RS01335 - 374746..376413 (-) 1668 WP_070081813.1 DAK2 domain-containing protein -
  HX0037_RS01340 - 376429..376791 (-) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  HX0037_RS01345 rpmB 377050..377238 (+) 189 WP_003154328.1 50S ribosomal protein L28 -
  HX0037_RS01350 spoVM 377316..377396 (-) 81 WP_003154329.1 stage V sporulation protein SpoVM -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77878.18 Da        Isoelectric Point: 6.7929

>NTDB_id=831333 HX0037_RS01320 WP_094246945.1 370992..373040(-) (recG) [Bacillus amyloliquefaciens strain HX0037]
MTHHQQTSIAEIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTVSVQELKTGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHV
FPAEKLTAFTDSLPFSLTTAQTRVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLKN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRGQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=831333 HX0037_RS01320 WP_094246945.1 370992..373040(-) (recG) [Bacillus amyloliquefaciens strain HX0037]
GTGACACACCATCAGCAAACTAGTATAGCGGAAATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTGCACGAACTTGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGACGACTATGAGCTGAGGGATTTAGAAGAAGTAA
AACATGAAGAAAGAGTGACGGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCCTACTTAAAAAAGAAACTGAC
ATTAGGTTCTGTCGTCACGATATCCGGGAAATGGGATAAACACAGACAGACCGTTTCCGTGCAGGAATTAAAAACTGGTC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCCGTTAAAGAAAACGTCACCGTAAAAATGATGAGACGGTTTATT
AAGGAAGCGCTGCAGCATCATTTGGACAGTGCGGCCGATCCGCTTCCTGAAAAATTGAGAATCCGCTATAAGCTGCCTGA
TTACAAACATGCCCTGCAGACGATGCATCAGCCTGAAACGAGGGAATCGTTACAGCAGGCAAGACGCCGGTTTGTTTATG
AGGAATTCTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGGGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCTGCTGAAAAGCTCACCGCTTTCACAGACAGCCTGCCGTTTTCGCTCACGACCGCACAGACGCGCGTGCTTCGGGA
AATTACCGCTGATATGACATCCCCTTACCGAATGAACCGTCTGCTGCAAGGTGATGTCGGTTCAGGGAAAACAGCCGTCG
CCGCCATCGCTTTGTACGCTGCGATTCTGTCGGGGTATCAGGGGGCATTAATGGTGCCGACTGAAATTCTGGCCGAACAG
CATGCCGATTCTCTCGTATCGTTGTTTGCAAATGAAGATGTAAATATCGCGCTTTTGACGAGTTCTGTAAAAGGAAAGCG
GCGCAGGGAGCTTTTGGAGCGGCTTGCTCTCGGAGAGATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGATGAAG
TGGAATTCAAAGCGCTGAGTCTTGTTATTACGGACGAGCAGCACCGGTTCGGGGTCGAACAGCGCAAAAAACTCAAGAAT
AAAGGTCAGGATCCGGATGTGCTGTTTATGACAGCCACCCCGATACCGAGAACGTTGGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTGATAGATGAAATGCCCGCGGGGCGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATAGAAAAAGAGCTGAAGCAGGGAAGGCAAGCCTATATTATCTGCCCGCTCATTGAAGAGTCGGAT
AAACTGGATGTACAGAATGCGATTGACGTATATAACATGCTGTCTGACGTATACCGGGGTAAATGGAATGTCGGCCTGAT
GCACGGGAAGCTCCATTCTGATGAAAAAGATCAGGTGATGAGAGAATTCAGCGCCAATCAATGTCAGGTACTTGTGTCAA
CAACCGTCGTAGAAGTCGGGGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGATTATCT
CAGCTCCATCAGCTCCGCGGCCGGGTCGGGCGGGGAGACCACCAATCTTTCTGCATCTTGATGGCCGATCCGAAATCCGA
AACCGGGAAGGAACGGATGAGAATCATGTCAGAGACAAACGACGGCTTCGAGCTGTCTGAAAAGGACCTTGAACTGCGCG
GCCCCGGTGATTTCTTCGGAAAAAAACAGAGCGGTATGCCCGAGTTCAAGGTAGCGGATATGGTTCATGACTACAGAGCT
TTGGAAACGGCCCGCCAGGATGCGGCCAACCTGGTGTCTTCAGAGGCTTTTTGGAAAGATGACGAATACCGCATGCTGCG
CGGTCAATTACTTTCAAGCGGCGTCCTAGAAGGGGAGAAATTAAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(261-415)

RecG wedge domain (RecG_wedge)

(11-164)

Helicase conserved C-terminal domain (Helicase_C)

(452-572)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

89.589

100

0.896
  recG/mmsA Streptococcus pneumoniae R6

50.225

97.801

0.491
  recG/mmsA Streptococcus pneumoniae R36A

50.225

97.801

0.491
  recG Neisseria meningitidis strain C311

39.663

95.748

0.38