Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OPT59_RS09540 Genome accession   NZ_CP125360
Coordinates   1915899..1916390 (-) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_120444     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1910899..1921390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT59_RS09525 (OPT59_09525) - 1913676..1914620 (+) 945 WP_003059456.1 magnesium transporter CorA family protein -
  OPT59_RS09530 (OPT59_09530) - 1914752..1915408 (+) 657 WP_003059462.1 DUF1129 domain-containing protein -
  OPT59_RS09535 (OPT59_09535) rpsR 1915541..1915780 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  OPT59_RS09540 (OPT59_09540) ssbA 1915899..1916390 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  OPT59_RS09545 (OPT59_09545) rpsF 1916412..1916702 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  OPT59_RS11300 - 1917661..1917954 (-) 294 WP_014612572.1 hypothetical protein -
  OPT59_RS09550 (OPT59_09550) mutY 1918119..1919285 (+) 1167 WP_042357990.1 A/G-specific adenine glycosylase -
  OPT59_RS09555 (OPT59_09555) trxA 1919336..1919650 (-) 315 WP_003052691.1 thioredoxin -
  OPT59_RS09560 (OPT59_09560) - 1919873..1921192 (+) 1320 Protein_1824 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=831294 OPT59_RS09540 WP_002993238.1 1915899..1916390(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=831294 OPT59_RS09540 WP_002993238.1 1915899..1916390(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGCATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368