Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R8615_RS00970 Genome accession   NZ_AP026929
Coordinates   175610..176203 (+) Length   197 a.a.
NCBI ID   WP_000271490.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 170610..181203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8615_RS00950 (PC1101_01830) ribE 171791..172258 (-) 468 WP_001099505.1 6,7-dimethyl-8-ribityllumazine synthase -
  R8615_RS00955 (PC1101_01840) - 172259..173464 (-) 1206 WP_000456639.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  R8615_RS00960 (PC1101_01850) ribE 173484..174119 (-) 636 WP_000493842.1 riboflavin synthase -
  R8615_RS00965 (PC1101_01860) ribD 174104..175204 (-) 1101 WP_001284106.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  R8615_RS00970 (PC1101_01870) ruvA 175610..176203 (+) 594 WP_000271490.1 Holliday junction branch migration protein RuvA Machinery gene
  R8615_RS00975 (PC1101_01880) - 176213..176776 (+) 564 WP_000166589.1 DNA-3-methyladenine glycosylase I -
  R8615_RS00980 - 176773..177450 (+) 678 Protein_189 lysostaphin resistance A-like protein -
  R8615_RS00985 (PC1101_01910) - 177591..178622 (-) 1032 WP_000255093.1 S66 peptidase family protein -
  R8615_RS00990 (PC1101_01920) - 178877..179560 (-) 684 WP_000078021.1 DUF1129 domain-containing protein -
  R8615_RS00995 (PC1101_01930) - 179572..180516 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21576.11 Da        Isoelectric Point: 7.3085

>NTDB_id=83127 R8615_RS00970 WP_000271490.1 175610..176203(+) (ruvA) [Streptococcus pneumoniae strain PZ900701114]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDGLPAKVAVQASVENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=83127 R8615_RS00970 WP_000271490.1 175610..176203(+) (ruvA) [Streptococcus pneumoniae strain PZ900701114]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGGCCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGTTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

99.492

100

0.995
  ruvA Streptococcus pneumoniae D39

99.492

100

0.995
  ruvA Streptococcus pneumoniae TIGR4

98.985

100

0.99
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416

Multiple sequence alignment