Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   OPT60_RS01980 Genome accession   NZ_CP125359
Coordinates   365691..367193 (+) Length   500 a.a.
NCBI ID   WP_003057826.1    Uniprot ID   A0AAE9U2R6
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 360691..372193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS01965 (OPT60_01965) - 360940..362121 (-) 1182 WP_046166170.1 serine hydrolase -
  OPT60_RS01970 (OPT60_01970) pbp3 362265..363281 (-) 1017 Protein_335 D-alanyl-D-alanine carboxypeptidase PBP3 -
  OPT60_RS01975 (OPT60_01975) amiA 363655..365625 (+) 1971 WP_042357846.1 peptide ABC transporter substrate-binding protein Regulator
  OPT60_RS01980 (OPT60_01980) amiC 365691..367193 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  OPT60_RS01985 (OPT60_01985) amiD 367193..368119 (+) 927 WP_084916649.1 oligopeptide ABC transporter permease OppC Regulator
  OPT60_RS01990 (OPT60_01990) amiE 368128..369198 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  OPT60_RS01995 (OPT60_01995) amiF 369191..370114 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  OPT60_RS02000 (OPT60_02000) - 370141..371181 (-) 1041 WP_283146184.1 IS30 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55942.32 Da        Isoelectric Point: 10.2619

>NTDB_id=831201 OPT60_RS01980 WP_003057826.1 365691..367193(+) (amiC) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKAAYESLTFQRMGYINYFSSKELKDNAS
KIDSSVTTEATSANKVIYEKYIHSLGNGWQLKRFPVSKKFYATRKIPIYERVWNFFSNLVVIDHPWKIQDKNNPNLARYV
RLENDKSIGWSLVGSGTQHKYLVYANGKFPYLHQNLVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRTYKNPKSMDDITKANYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVLIAYVIGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASSPKSYVLPALILGILSIPSTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRDHLFKNAMVPIVSGIPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIAMTIVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=831201 OPT60_RS01980 WP_003057826.1 365691..367193(+) (amiC) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATGAAAAAATACATTTTAAACCGTATCTTACGATCGTTAGTATCGGTTGTTCTGGTAACGGCTTTAACATACACCATCGT
ATATACCCTCGTCCCTGTCGGTCTTATCTTTAAACAAGACCCTAACTACAATAAGATGACGACGACACCAGATAAAAAGG
CTGCTTATGAAAGCTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGTAAAGAATTAAAAGATAATGCTTCT
AAAATAGATAGTAGTGTAACGACTGAAGCGACTAGTGCTAACAAGGTTATTTATGAGAAATATATTCATTCCCTCGGTAA
TGGCTGGCAGCTAAAACGTTTCCCGGTTAGCAAAAAATTCTATGCTACTCGTAAGATTCCTATTTACGAACGTGTTTGGA
ACTTCTTTTCAAACTTAGTTGTTATTGACCATCCTTGGAAAATTCAAGACAAGAATAACCCTAATCTAGCTAGATATGTT
CGCCTTGAAAATGATAAATCTATTGGCTGGTCACTTGTTGGATCGGGGACACAACACAAATACCTTGTTTATGCCAATGG
CAAGTTCCCTTACCTTCACCAAAACCTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGACAAGGACGAACAGCTCTTCAAGATGTTACTTTCCCATCAGGAGTGACTAAAAAATCATCA
GTGGATATTTACAGTCGTACTTATAAAAATCCAAAATCAATGGATGATATTACCAAAGCAAACTATGGTAAGGGCGATTC
ATATACTAAGACCATTAATAACTATGTTGACCCGTCAATGATTCACAATTCCTTTGTTATTGGGTTCTTTGGTGTCCTAA
TTGCTTATGTTATTGGACTACCTCTCGGTCTATTTATGGCACGCTTTAAAAATACCTATTTTGATCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCCTTACCAAGTATTGCCGTTATCTATGTTGTTCGCTTCCTAGGAAGTATGGTTGGCTTGCC
AGATAGTTTTCCTATGCTAGGAGCGTCTAGCCCTAAATCTTACGTATTACCAGCTCTTATTTTGGGAATTTTAAGTATCC
CAAGTACAGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCTAGTGATTGGGTACGGTTTGCTCGCTCAAAAGGG
TTATCAGAATCTGAAATTTATAGAGACCACCTTTTCAAAAATGCTATGGTTCCGATTGTCTCAGGTATTCCGGCAAGTAT
TATTCTTGCGATTGGTGGAGCGACATTAACAGAGACGGTTTTTGCCTTCCCAGGTATGGGGAAAATGTTGATTGATTCTA
TCAAATCAGCTAACAACTCAATGATTGTTGGGTTAACCTTTATTTTCACTGTCTTGTCAATTGTATCTCTACTGTTAGGA
GATATTGCTATGACAATTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60

100

0.6
  amiC Streptococcus thermophilus LMD-9

59.8

100

0.598
  amiC Streptococcus thermophilus LMG 18311

59.8

100

0.598