Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   OPT60_RS01985 Genome accession   NZ_CP125359
Coordinates   367193..368119 (+) Length   308 a.a.
NCBI ID   WP_084916649.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 362193..373119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS01970 (OPT60_01970) pbp3 362265..363281 (-) 1017 Protein_335 D-alanyl-D-alanine carboxypeptidase PBP3 -
  OPT60_RS01975 (OPT60_01975) amiA 363655..365625 (+) 1971 WP_042357846.1 peptide ABC transporter substrate-binding protein Regulator
  OPT60_RS01980 (OPT60_01980) amiC 365691..367193 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  OPT60_RS01985 (OPT60_01985) amiD 367193..368119 (+) 927 WP_084916649.1 oligopeptide ABC transporter permease OppC Regulator
  OPT60_RS01990 (OPT60_01990) amiE 368128..369198 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  OPT60_RS01995 (OPT60_01995) amiF 369191..370114 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  OPT60_RS02000 (OPT60_02000) - 370141..371181 (-) 1041 WP_283146184.1 IS30 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34872.93 Da        Isoelectric Point: 9.2260

>NTDB_id=831202 OPT60_RS01985 WP_084916649.1 367193..368119(+) (amiD) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
METIDKSKFRFVERDSRASEVIDTPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRFRDLEYNLASQTLGTPMYKIAIKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=831202 OPT60_RS01985 WP_084916649.1 367193..368119(+) (amiD) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATGGAAACGATTGATAAATCAAAATTTCGATTTGTTGAGCGCGATAGCAGAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTATTGGAAATCCGTATTCCGTCAATTTTTCTCTAAAAAGTCTACTATCTTCATGCTAATGATTTTAGTGACCATCT
TATTGATGAGTTTTATTTACCCAATGTTTGCGAATTATGACTTTGGTGATGTGAGTAATATCAACGATTTCTCGAAACGT
TATATTTGGCCCAACGCCGAATACTGGTTTGGAACAGATAAAAACGGACAATCTTTGTTTGATGGTGTTTGGTATGGAGC
GCGTAATTCTATCTTAATTTCTGTTATAGCAACATTGATTAATGTGACTATCGGAGTTATTTTAGGAGCTATTTGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAGATTTATAATGTCATCTCAAACATTCCTTCAATGTTAATTATTATTGTT
TTGACCTATTCATTAGGTGCTGGTTTTTGGAATTTGATTTTAGCTTTCTGTATCACTGGATGGATCGGTGTAGCTTACTC
TATCCGTGTGCAAATCTTACGTTTCCGTGATTTGGAGTACAACCTTGCTAGCCAAACCCTAGGAACACCAATGTACAAAA
TTGCCATTAAGAACCTCTTGCCTCAATTGGTTTCAGTTATCATGACCATGTTGTCACAAATGTTACCAGTGTACGTGTCT
TCTGAGGCTTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACGACTCCAAGCTTAGGGCGTTTGATTGCTAATTATTC
TAGCAACTTAACAACAAATGCTTACCTCTTCTGGATTCCCTTAGTAACGTTGATTTTAGTATCATTACCATTGTATATTG
TCGGACAAAACCTGGCAGATGCCAGCGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

72.727

100

0.727
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727