Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QMB36_RS03575 Genome accession   NZ_CP125300
Coordinates   801696..803033 (-) Length   445 a.a.
NCBI ID   WP_011266589.1    Uniprot ID   Q4ZYI2
Organism   Pseudomonas syringae pv. syringae strain B48     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 796696..808033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMB36_RS03560 (QMB36_03560) - 796826..800035 (+) 3210 WP_054091785.1 PilC/PilY family type IV pilus protein -
  QMB36_RS03565 (QMB36_03565) - 800047..800454 (+) 408 WP_032620231.1 type IV pilin protein -
  QMB36_RS03570 (QMB36_03570) thiO 800480..801583 (+) 1104 WP_054091784.1 glycine oxidase ThiO -
  QMB36_RS03575 (QMB36_03575) pilR 801696..803033 (-) 1338 WP_011266589.1 sigma-54 dependent transcriptional regulator Regulator
  QMB36_RS03580 (QMB36_03580) pilS 803036..804628 (-) 1593 WP_024642307.1 ATP-binding protein Regulator
  QMB36_RS03585 (QMB36_03585) - 804618..804857 (-) 240 WP_011266590.1 PP0621 family protein -
  QMB36_RS03590 (QMB36_03590) - 804978..806000 (-) 1023 WP_054091783.1 outer membrane protein assembly factor BamD -
  QMB36_RS03595 (QMB36_03595) rluD 806150..807112 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QMB36_RS03600 (QMB36_03600) pgeF 807109..807837 (+) 729 WP_054091782.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49737.68 Da        Isoelectric Point: 6.3796

>NTDB_id=831015 QMB36_RS03575 WP_011266589.1 801696..803033(-) (pilR) [Pseudomonas syringae pv. syringae strain B48]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVNSALSLPGAQPTRSIDNRLLGDSLAMRTLRSQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQENDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=831015 QMB36_RS03575 WP_011266589.1 801696..803033(-) (pilR) [Pseudomonas syringae pv. syringae strain B48]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGTAGTGCGCGTAACGTTGCCGAAGCCCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCGGACGGCAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATCCACGCGCTGAAGGCCGGAGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTGGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCGCAACCCACGCGCAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAGTCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGTGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGAGGCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAACTCATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTTAGCG
GTGCGCACGAAGACAAGCCTGGTCTGTTTCAGGCGGCGCACACCGGGACGCTGTTTCTCGATGAAGTCGCAGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCCGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCTGCCAGCCCTCAGGAGAACGACGGCCCGAGCCTGGCCGATATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCGGCGGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAAAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4ZYI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.201

99.551

0.769
  pilR Acinetobacter baumannii strain A118

48.608

100

0.51
  luxO Vibrio cholerae strain A1552

37.613

99.775

0.375