Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QLX50_RS16370 Genome accession   NZ_CP125283
Coordinates   3330317..3331006 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain IFST-221     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3325317..3336006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX50_RS16335 (QLX50_16335) - 3325514..3325996 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QLX50_RS16340 (QLX50_16340) flgM 3326011..3326277 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QLX50_RS16345 (QLX50_16345) - 3326347..3326766 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  QLX50_RS16350 (QLX50_16350) comFC 3326840..3327529 (-) 690 WP_217807200.1 phosphoribosyltransferase family protein Machinery gene
  QLX50_RS16355 (QLX50_16355) - 3327535..3327819 (-) 285 WP_003151389.1 competence protein ComFB -
  QLX50_RS16360 (QLX50_16360) comFA 3327877..3329262 (-) 1386 WP_044801919.1 DEAD/DEAH box helicase Machinery gene
  QLX50_RS16365 (QLX50_16365) - 3329371..3330219 (-) 849 WP_044801920.1 DegV family protein -
  QLX50_RS16370 (QLX50_16370) degU 3330317..3331006 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QLX50_RS16375 (QLX50_16375) degS 3331083..3332246 (-) 1164 WP_007614106.1 two-component sensor histidine kinase DegS Regulator
  QLX50_RS16380 (QLX50_16380) - 3332469..3333116 (+) 648 WP_007614107.1 YigZ family protein -
  QLX50_RS16385 (QLX50_16385) - 3333121..3334341 (+) 1221 WP_044801921.1 LCP family protein -
  QLX50_RS16390 (QLX50_16390) - 3334440..3335516 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=830642 QLX50_RS16370 WP_003219701.1 3330317..3331006(-) (degU) [Bacillus velezensis strain IFST-221]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=830642 QLX50_RS16370 WP_003219701.1 3330317..3331006(-) (degU) [Bacillus velezensis strain IFST-221]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCTGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1