Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QLX50_RS16350 Genome accession   NZ_CP125283
Coordinates   3326840..3327529 (-) Length   229 a.a.
NCBI ID   WP_217807200.1    Uniprot ID   -
Organism   Bacillus velezensis strain IFST-221     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3321840..3332529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX50_RS16315 (QLX50_16315) fliW 3321931..3322362 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  QLX50_RS16320 (QLX50_16320) - 3322392..3322961 (-) 570 WP_007407476.1 DUF6470 family protein -
  QLX50_RS16325 (QLX50_16325) flgL 3323052..3323969 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  QLX50_RS16330 (QLX50_16330) flgK 3323981..3325498 (-) 1518 WP_044801917.1 flagellar hook-associated protein FlgK -
  QLX50_RS16335 (QLX50_16335) - 3325514..3325996 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QLX50_RS16340 (QLX50_16340) flgM 3326011..3326277 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QLX50_RS16345 (QLX50_16345) - 3326347..3326766 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  QLX50_RS16350 (QLX50_16350) comFC 3326840..3327529 (-) 690 WP_217807200.1 phosphoribosyltransferase family protein Machinery gene
  QLX50_RS16355 (QLX50_16355) - 3327535..3327819 (-) 285 WP_003151389.1 competence protein ComFB -
  QLX50_RS16360 (QLX50_16360) comFA 3327877..3329262 (-) 1386 WP_044801919.1 DEAD/DEAH box helicase Machinery gene
  QLX50_RS16365 (QLX50_16365) - 3329371..3330219 (-) 849 WP_044801920.1 DegV family protein -
  QLX50_RS16370 (QLX50_16370) degU 3330317..3331006 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QLX50_RS16375 (QLX50_16375) degS 3331083..3332246 (-) 1164 WP_007614106.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25238.99 Da        Isoelectric Point: 8.4871

>NTDB_id=830640 QLX50_RS16350 WP_217807200.1 3326840..3327529(-) (comFC) [Bacillus velezensis strain IFST-221]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKMEKRFLLRQNRSVY
LYNDAMKDPLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVASFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=830640 QLX50_RS16350 WP_217807200.1 3326840..3327529(-) (comFC) [Bacillus velezensis strain IFST-221]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAATGGAAAAGCGTTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACCCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGTTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCGCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59