Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QLX50_RS11610 Genome accession   NZ_CP125283
Coordinates   2417154..2418224 (-) Length   356 a.a.
NCBI ID   WP_007612574.1    Uniprot ID   -
Organism   Bacillus velezensis strain IFST-221     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2412154..2423224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX50_RS11560 (QLX50_11560) - 2412213..2412797 (-) 585 WP_015240205.1 signal peptidase I -
  QLX50_RS11565 (QLX50_11565) tapA 2412769..2413440 (-) 672 WP_044802562.1 amyloid fiber anchoring/assembly protein TapA -
  QLX50_RS11570 (QLX50_11570) - 2413699..2414028 (+) 330 WP_038459175.1 DUF3889 domain-containing protein -
  QLX50_RS11575 (QLX50_11575) - 2414063..2414248 (-) 186 WP_044802561.1 YqzE family protein -
  QLX50_RS11580 (QLX50_11580) comGG 2414305..2414682 (-) 378 WP_044802560.1 competence type IV pilus minor pilin ComGG Machinery gene
  QLX50_RS11585 (QLX50_11585) comGF 2414683..2415078 (-) 396 WP_044802559.1 competence type IV pilus minor pilin ComGF -
  QLX50_RS11590 (QLX50_11590) comGE 2415092..2415406 (-) 315 WP_038459179.1 competence type IV pilus minor pilin ComGE Machinery gene
  QLX50_RS11595 (QLX50_11595) comGD 2415390..2415827 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  QLX50_RS11600 (QLX50_11600) comGC 2415817..2416125 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  QLX50_RS11605 (QLX50_11605) comGB 2416130..2417167 (-) 1038 WP_044802558.1 competence type IV pilus assembly protein ComGB Machinery gene
  QLX50_RS11610 (QLX50_11610) comGA 2417154..2418224 (-) 1071 WP_007612574.1 competence type IV pilus ATPase ComGA Machinery gene
  QLX50_RS11615 (QLX50_11615) - 2418421..2419371 (-) 951 WP_032874012.1 magnesium transporter CorA family protein -
  QLX50_RS11620 (QLX50_11620) - 2419517..2420818 (+) 1302 WP_043020784.1 hemolysin family protein -
  QLX50_RS11625 (QLX50_11625) - 2420856..2421686 (-) 831 WP_044802557.1 STAS domain-containing protein -
  QLX50_RS11635 (QLX50_11635) - 2421893..2422273 (-) 381 WP_038459192.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QLX50_RS11640 (QLX50_11640) - 2422510..2422755 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40530.84 Da        Isoelectric Point: 9.3437

>NTDB_id=830622 QLX50_RS11610 WP_007612574.1 2417154..2418224(-) (comGA) [Bacillus velezensis strain IFST-221]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRETRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=830622 QLX50_RS11610 WP_007612574.1 2417154..2418224(-) (comGA) [Bacillus velezensis strain IFST-221]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAATTGTCCTTATTTCGGGGAGCGGGCGCCGCATTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCTCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGCTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGGGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGGAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTTGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

38.177

98.596

0.376