Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   R3F76_RS21420 Genome accession   NZ_CP139647
Coordinates   4394179..4396287 (-) Length   702 a.a.
NCBI ID   WP_039148367.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain CNPSo 23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4389179..4401287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3F76_RS21390 (R3F76_21385) - 4389277..4390047 (+) 771 WP_038932967.1 DUF502 domain-containing protein -
  R3F76_RS21395 (R3F76_21390) - 4390153..4391010 (+) 858 WP_039156924.1 NAD(P)-dependent oxidoreductase -
  R3F76_RS21400 (R3F76_21395) - 4391039..4391560 (-) 522 WP_038932965.1 ATPase AAA -
  R3F76_RS21405 (R3F76_21400) - 4391736..4392125 (+) 390 WP_039148358.1 nuclear transport factor 2 family protein -
  R3F76_RS21410 (R3F76_21405) - 4392222..4393052 (+) 831 WP_039148361.1 helix-turn-helix domain-containing protein -
  R3F76_RS21415 (R3F76_21410) panE 4393252..4394182 (+) 931 Protein_4256 2-dehydropantoate 2-reductase -
  R3F76_RS21420 (R3F76_21415) recG 4394179..4396287 (-) 2109 WP_039148367.1 ATP-dependent DNA helicase RecG Machinery gene
  R3F76_RS21425 (R3F76_21420) - 4396474..4396764 (+) 291 WP_038932960.1 succinate dehydrogenase assembly factor 2 -
  R3F76_RS21430 (R3F76_21425) mfd 4396761..4400279 (+) 3519 WP_039148370.1 transcription-repair coupling factor -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77093.31 Da        Isoelectric Point: 8.6713

>NTDB_id=830580 R3F76_RS21420 WP_039148367.1 4394179..4396287(-) (recG) [Bradyrhizobium japonicum strain CNPSo 23]
MRPSLLNPLFAPVTSLPGVGPKQDKLLQYLLSRNETPRLVDLLLHLPSQVIDRRARPKIRDAVQGTMVTLEVTIDRHRPP
PPRNARAPYLVYASDDTGDVVLTFFRAKPGYVEKLLPVGEKRYVSGTLQMYDGIPQIVHPDRVLDEEAIAKLSGIDPVYP
LTTGLALGSLRRAVAQALQKLPALPEWISPEVMRRCSFPTVTEALSRVHQPVELTDILPEKPYWSRLAFDELLAGQLALA
LIRAQLRRPAGVRNAGDGHLRNKIIDALPYALTPSQRNAAAAIAEDLKQPVRMLRLLQGDVGSGKTVVALLAAAAVAEVG
KQAALMAPTEILARQHIKTIAPLAERAGLRVAILTGREKGKERRELLAQLEAGEINLLVGTHALIQDDVIFNDLALAVVD
EQHRFGVRERLALTSKGAAVDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIETRTISMSRLDEVTDSIGRALQA
GKLVYWICPLVDESEAEGTEHLTNATKRFESLQKRFGDRVGLVHGQMKGTEKDRVMGQFAAHEIGLLVATTVVEVGVDVP
AATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYSEPLGEMSKARLKVIRETTDGFRIAEEDLKLRGEGDVLGVRQ
SGLPGYRIARSEVHGQLITQARDEALRILKDDPKLKGERGEALRCLLYLYERDEAIPLIGAG

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=830580 R3F76_RS21420 WP_039148367.1 4394179..4396287(-) (recG) [Bradyrhizobium japonicum strain CNPSo 23]
ATGCGCCCCAGCCTGCTCAATCCGCTGTTTGCTCCCGTGACCAGCCTGCCCGGCGTCGGCCCGAAGCAGGACAAGCTGCT
GCAGTACCTGCTCAGCCGCAATGAGACGCCGCGCCTGGTTGACCTGCTGCTGCATTTGCCGAGCCAGGTCATCGACCGCC
GCGCGCGGCCAAAGATCCGCGACGCGGTCCAGGGAACCATGGTGACGCTGGAGGTCACCATCGATCGCCATCGCCCGCCT
CCGCCGCGCAACGCTCGCGCGCCCTATCTCGTCTACGCAAGCGACGACACCGGCGACGTCGTGCTGACCTTCTTCCGCGC
CAAGCCCGGCTACGTCGAAAAACTGCTGCCTGTTGGCGAGAAGCGCTACGTCTCGGGCACGCTCCAGATGTATGACGGCA
TCCCGCAGATCGTGCATCCCGACCGCGTGCTCGACGAGGAGGCGATCGCAAAACTCTCCGGCATCGACCCGGTCTATCCG
CTGACCACGGGTCTGGCGCTCGGCTCGCTGCGACGCGCGGTCGCCCAAGCGCTGCAGAAGCTGCCCGCTTTGCCGGAGTG
GATCAGCCCGGAGGTGATGCGCCGCTGCAGTTTTCCGACGGTCACCGAGGCGCTCAGCCGCGTGCATCAACCGGTCGAGC
TCACCGACATCCTGCCCGAAAAGCCCTACTGGTCGCGCCTCGCCTTCGACGAGCTGTTGGCCGGCCAGCTCGCGCTGGCC
CTGATCCGCGCGCAATTGCGCCGCCCCGCCGGCGTCCGCAATGCCGGCGACGGCCACTTGCGCAACAAGATCATCGACGC
CCTGCCCTATGCCCTGACCCCGTCCCAGCGCAACGCCGCGGCCGCTATCGCCGAGGATCTGAAACAGCCCGTGCGCATGC
TGCGCCTGCTTCAGGGCGATGTCGGCTCGGGCAAGACCGTCGTGGCGCTGCTGGCGGCCGCCGCCGTCGCCGAAGTCGGC
AAGCAGGCCGCGCTGATGGCGCCGACGGAAATTTTGGCGCGGCAGCACATCAAGACCATCGCCCCGCTCGCGGAGCGCGC
AGGGCTGCGCGTGGCCATCCTCACCGGCCGCGAGAAGGGCAAGGAGCGGCGCGAGCTGTTGGCGCAACTCGAAGCCGGCG
AGATCAATCTCCTCGTCGGCACCCACGCGCTGATCCAGGACGACGTGATCTTCAACGATCTCGCCCTGGCCGTCGTCGAC
GAGCAGCATCGTTTCGGCGTGCGCGAACGCCTCGCGCTGACCTCGAAGGGCGCCGCCGTCGACGTGCTGGTGCTGAGCGC
GACGCCGATCCCGCGCACGCTGGTGCTGACCTATTTCGGCGACATGGACATCAGCGAGCTCCGCGAAAAGCCCGCCGGCC
GCCAGCCGATCGAGACCCGCACCATATCGATGAGCCGCCTCGACGAGGTCACCGATAGCATCGGCCGCGCGTTGCAGGCG
GGCAAGCTGGTCTACTGGATCTGCCCGCTGGTCGATGAATCCGAGGCCGAAGGCACCGAGCACCTGACCAATGCGACCAA
GCGCTTCGAGAGCTTGCAAAAGCGTTTCGGCGACCGCGTCGGCCTCGTCCACGGCCAGATGAAGGGCACCGAGAAGGACC
GCGTGATGGGCCAGTTCGCCGCCCATGAGATCGGCCTTCTGGTTGCGACCACCGTGGTCGAGGTCGGCGTCGACGTGCCG
GCCGCGACCATCATGGTGATCGAGAACGCCGAACGGTTTGGCTTGGCCCAGCTGCACCAGCTGCGCGGCCGCATCGGGCG
CGGCTCGGAAGCCTCGACCTGCCTCCTTCTCTACTCGGAGCCGCTCGGCGAAATGTCCAAGGCACGGCTGAAGGTCATCC
GCGAGACCACCGACGGCTTCCGCATCGCCGAGGAGGATTTGAAGCTGCGCGGCGAAGGCGACGTGCTGGGCGTCCGCCAG
AGCGGCTTGCCCGGCTACCGCATCGCGCGGTCGGAGGTGCACGGCCAGCTCATCACCCAGGCCAGAGACGAGGCGCTGCG
GATCCTGAAGGACGATCCGAAGCTGAAGGGCGAGCGCGGCGAGGCGCTGCGGTGCCTGCTGTATCTCTATGAGCGGGACG
AGGCGATCCCGCTGATCGGAGCGGGTTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(18-178)

Helicase conserved C-terminal domain (Helicase_C)

(502-588)

DEAD/DEAH box helicase (DEAD)

(296-430)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.857

92.735

0.397
  recG Bacillus subtilis subsp. subtilis str. 168

39.021

96.011

0.375
  recG/mmsA Streptococcus pneumoniae R6

38.991

93.162

0.363
  recG/mmsA Streptococcus pneumoniae R36A

38.991

93.162

0.363