Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   R3F76_RS06065 Genome accession   NZ_CP139647
Coordinates   1269594..1272551 (-) Length   985 a.a.
NCBI ID   WP_080704018.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain CNPSo 23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1264594..1277551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3F76_RS06030 (R3F76_06035) - 1265185..1265331 (+) 147 WP_014492017.1 hypothetical protein -
  R3F76_RS06035 (R3F76_06040) - 1265374..1265511 (-) 138 WP_014492018.1 hypothetical protein -
  R3F76_RS06040 (R3F76_06045) - 1265849..1266271 (-) 423 WP_014492019.1 hypothetical protein -
  R3F76_RS06045 (R3F76_06050) - 1266524..1267450 (-) 927 WP_051664833.1 hypothetical protein -
  R3F76_RS06050 (R3F76_06055) - 1267834..1268274 (-) 441 WP_028158003.1 nuclear transport factor 2 family protein -
  R3F76_RS06055 (R3F76_06060) - 1268513..1268965 (-) 453 WP_014492022.1 nuclear transport factor 2 family protein -
  R3F76_RS06060 (R3F76_06065) - 1269260..1269496 (+) 237 WP_014492023.1 hypothetical protein -
  R3F76_RS06065 (R3F76_06070) uvrB 1269594..1272551 (-) 2958 WP_080704018.1 excinuclease ABC subunit UvrB Machinery gene
  R3F76_RS06070 (R3F76_06075) - 1272641..1272871 (-) 231 WP_014492025.1 hypothetical protein -
  R3F76_RS06075 (R3F76_06080) - 1272926..1273153 (-) 228 WP_014492026.1 hypothetical protein -
  R3F76_RS06080 (R3F76_06085) - 1273277..1274194 (-) 918 WP_028151584.1 LysR substrate-binding domain-containing protein -
  R3F76_RS06085 (R3F76_06090) - 1274503..1275282 (+) 780 WP_038932181.1 sulfite exporter TauE/SafE family protein -
  R3F76_RS06090 (R3F76_06095) - 1275279..1275509 (+) 231 WP_014492029.1 hypothetical protein -
  R3F76_RS06095 (R3F76_06100) - 1275762..1276460 (+) 699 WP_039153964.1 glutathione S-transferase family protein -
  R3F76_RS06100 (R3F76_06105) - 1276523..1276738 (-) 216 WP_080704017.1 cysteine-rich CWC family protein -

Sequence

Protein


Download         Length: 985 a.a.        Molecular weight: 109004.06 Da        Isoelectric Point: 6.3426

>NTDB_id=830563 R3F76_RS06065 WP_080704018.1 1269594..1272551(-) (uvrB) [Bradyrhizobium japonicum strain CNPSo 23]
MAKKPAPPKSPKSKAPNSKAHRPDVQPIGPALAELLNPAINRGDAGLGSGTGLQPPPDNSRDRRAGGEAAAHRARASTPK
EFPQDNAKPMPLRPNPQPPGARATTEGFEEAPQANYGTAATIPTLDPELARQLGLPTEEDDAEALARPPRTKMEALGVKA
TADALESLIREGRPEFRKDDGSTKVWTPHRPPRPEKSEGGVRFEIKSPYQPRGDQPTAIAELVEGIQRNDRSQVLLGVTG
SGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM
RHSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQADFTRGTFRVRGDVIDI
FPAHYEDRAWRVNLFGDTIETIEEFDPLTGHKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLHDQGRLLE
AQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRLPGEPPPTLFEYVPDNALVFADESHVTVPQIGGMFRGDFRRKATLA
EYGFRLPSCMDNRPLRFEEWDMMRPQTVAVSATPGGWELNESGGVFVEQVIRPTGLIDPPVNIRPARTQVDDLVGEVRAT
AQAGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILD
ADKEGFLRSETSLIQTIGRAARNVDGQVILYADQMTGSMERAIAETNRRREKQVEYNTANGITPESVKKQIGDILNSVYE
RDHVLVEVGGQDMTDDVISIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRATELAVVDDPTAKQRTVQVKAG
AYAGTKKYGDAANLPVSAMKKKTVSSALKASGGGSGSKVHKPHLDEMHGPESLPYRENPSLPSKPFGSTSRIIQPTDSRQ
SGPEFGPAPKSTGGAPGRRGGWKKR

Nucleotide


Download         Length: 2958 bp        

>NTDB_id=830563 R3F76_RS06065 WP_080704018.1 1269594..1272551(-) (uvrB) [Bradyrhizobium japonicum strain CNPSo 23]
ATGGCGAAGAAACCTGCTCCCCCGAAATCCCCCAAATCCAAGGCCCCGAACTCCAAGGCGCACCGCCCTGACGTGCAGCC
GATCGGGCCGGCGCTGGCCGAACTTCTGAATCCCGCGATCAATCGCGGCGATGCCGGGCTGGGATCGGGCACCGGCCTGC
AGCCGCCGCCGGACAATTCGCGCGACCGCCGCGCCGGGGGCGAGGCTGCCGCGCATCGCGCGCGCGCCTCGACGCCGAAA
GAGTTTCCGCAGGATAATGCCAAGCCGATGCCGTTGCGGCCCAATCCGCAGCCGCCGGGCGCGCGCGCGACCACCGAAGG
CTTTGAAGAAGCGCCGCAGGCCAATTACGGCACTGCCGCCACGATCCCGACGCTCGATCCGGAACTGGCGCGACAGCTCG
GACTTCCGACCGAAGAGGACGATGCCGAGGCGCTGGCGCGGCCACCGCGCACCAAGATGGAGGCGCTCGGCGTCAAGGCG
ACCGCCGACGCGCTGGAATCGCTGATCCGCGAGGGCCGGCCGGAATTCCGCAAGGACGACGGCTCCACCAAGGTGTGGAC
CCCGCACCGGCCGCCGCGCCCGGAGAAGTCCGAAGGCGGCGTGCGCTTCGAGATCAAATCGCCCTACCAGCCGCGCGGCG
ACCAGCCGACCGCGATCGCCGAACTCGTCGAAGGCATCCAGCGTAACGACCGCAGCCAAGTGCTGCTCGGCGTCACCGGC
TCCGGCAAGACCTACACCATGGCCAAGGTGATCGAGGCGACGCAGCGGCCCGCCATCATCCTTGCGCCGAACAAGACGCT
CGCCGCCCAGCTCTATGGCGAGTTCAAGAGCTTTTTCCCCGACAACGCGGTCGAGTATTTCGTCAGCTATTACGACTACT
ACCAGCCGGAAGCCTACGTCCCGCGCACCGACACCTACATCGAAAAGGATTCTTCGATCAACGAGCAGATCGACCGCATG
CGCCACTCGGCGACGCGCGCGCTGCTCGAACGCGACGACGTCATCATCGTGGCGTCGGTGTCCTGCATCTACGGTATCGG
CTCGGTCGAGACCTACACCGCGATGACCTTCGCGCTGAAGAAGGGCGAGCGCATCGATCAGCGCCAGCTGATCGCCGACC
TCGTCGCCCTCCAGTACAAGCGCACCCAGGCCGATTTTACCCGCGGCACGTTTCGCGTACGCGGCGACGTCATCGACATC
TTCCCGGCGCACTATGAAGACCGGGCCTGGCGCGTGAACCTGTTCGGCGACACCATCGAGACCATCGAGGAGTTCGATCC
GCTCACCGGCCACAAGCAGGACGAGCTCGAATTCATCAAGATGTATGCCAACTCGCACTACGTGACGCCGCGCCCGACGC
TGGTGCAGGCGATCAAGTCGATCAAATCGGAGCTGAAGCAGCGGCTCGACCAACTGCACGACCAGGGCCGTCTTCTGGAA
GCGCAGCGGCTGGAGCAGCGCACCACCTTCGATCTCGAGATGATGGAGGCGACGGGAAGCTGCGCCGGCATCGAGAACTA
TTCGCGCTATCTCACCGGGCGCCTGCCCGGCGAGCCGCCGCCGACGCTGTTCGAATACGTCCCCGACAACGCGCTGGTGT
TCGCCGACGAGAGCCACGTCACCGTGCCGCAGATCGGCGGCATGTTCCGCGGCGACTTCCGCCGCAAGGCGACGCTGGCC
GAATACGGCTTCCGTTTGCCCTCCTGCATGGACAACCGCCCGCTCCGCTTCGAGGAGTGGGACATGATGCGGCCGCAGAC
GGTTGCGGTGTCGGCGACGCCGGGCGGCTGGGAGCTGAACGAGAGCGGTGGCGTGTTCGTCGAGCAGGTGATCAGACCGA
CGGGGCTCATTGATCCTCCCGTTAACATCCGCCCCGCCCGCACCCAGGTCGACGATCTCGTCGGCGAGGTCCGTGCCACC
GCCCAGGCCGGCTACCGCTCGCTGATCACCGTGCTGACCAAGCGCATGGCGGAGGACCTCACCGAATATCTGCATGAGCA
GGGGATTCGCGTCCGCTACATGCACTCCGATATCGACACCATCGAGCGCATCGAGATCATCCGGGATCTCCGCCTCGGCG
CGTTCGACGCGCTGGTCGGCATCAACCTCTTGCGCGAAGGCCTCGACATTCCCGAATGCGCGCTGGTCGCGATTCTGGAC
GCCGACAAGGAAGGTTTTTTGCGCAGTGAAACGTCCTTGATTCAGACCATCGGCCGTGCCGCGCGCAACGTCGACGGCCA
GGTGATCCTCTACGCCGACCAGATGACGGGCTCGATGGAGCGCGCCATCGCGGAAACCAACCGGCGCCGCGAAAAGCAGG
TCGAGTACAACACCGCCAACGGCATCACGCCGGAGAGTGTGAAGAAGCAGATCGGCGACATCCTCAACTCCGTCTACGAG
CGCGACCACGTGCTGGTCGAGGTCGGCGGCCAAGACATGACCGACGACGTCATTTCGATCGGTCACAATTTCGAAGCCGT
GCTCGCCGATCTCGAAACCCGTATGCGCGAGGCCGCCGCCGATCTGAACTTCGAGGAAGCCGCCCGCCTCCGCGACGAAG
TCAAGCGCCTGCGCGCCACGGAGCTCGCGGTGGTCGACGACCCCACCGCCAAGCAACGCACCGTGCAAGTCAAGGCCGGC
GCCTACGCCGGCACCAAGAAGTACGGCGACGCCGCGAATTTGCCCGTCAGCGCCATGAAGAAGAAAACCGTGAGCTCCGC
GCTGAAAGCCAGCGGCGGCGGCAGCGGCTCGAAGGTGCACAAGCCGCATCTCGACGAGATGCACGGGCCGGAGTCGTTGC
CCTACCGCGAAAACCCGAGCCTGCCGTCAAAACCGTTCGGCAGCACGAGCCGGATCATCCAGCCGACGGACTCACGGCAG
TCGGGACCGGAGTTCGGGCCCGCGCCGAAGTCGACGGGCGGGGCGCCGGGGCGGCGGGGTGGGTGGAAGAAGAGGTAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(826-859)

Type III restriction enzyme, res subunit (ResIII)

(210-337)

UvrB interaction domain (UvrB_inter)

(358-447)

Ultra-violet resistance protein B (UvrB)

(750-791)

Helicase conserved C-terminal domain (Helicase_C)

(641-742)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

54.381

67.208

0.365
  uvrB Streptococcus pneumoniae R6

54.381

67.208

0.365
  uvrB Streptococcus pneumoniae D39

54.381

67.208

0.365