Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OH685_RS05670 Genome accession   NZ_CP125227
Coordinates   1172530..1172934 (+) Length   134 a.a.
NCBI ID   WP_017387615.1    Uniprot ID   A0A429KDB1
Organism   Acinetobacter pittii strain SO1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1167530..1177934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS05655 (OH685_05705) relA 1168516..1170822 (+) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  OH685_RS05660 (OH685_05710) - 1170869..1171642 (-) 774 WP_017387613.1 SDR family oxidoreductase -
  OH685_RS05665 (OH685_05715) mazG 1171755..1172561 (+) 807 WP_017387614.1 nucleoside triphosphate pyrophosphohydrolase -
  OH685_RS05670 (OH685_05720) comEA 1172530..1172934 (+) 405 WP_017387615.1 ComEA family DNA-binding protein Machinery gene
  OH685_RS05675 (OH685_05725) pcnB 1173060..1174523 (+) 1464 WP_019767971.1 polynucleotide adenylyltransferase PcnB -
  OH685_RS05680 (OH685_05730) folK 1174520..1175002 (+) 483 WP_019767970.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  OH685_RS05685 (OH685_05735) panB 1175048..1175857 (+) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  OH685_RS05690 (OH685_05740) panC 1175861..1176709 (+) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  OH685_RS05695 (OH685_05745) rapZ 1176733..1177584 (+) 852 WP_002117179.1 RNase adapter RapZ -
  OH685_RS05700 (OH685_05750) - 1177581..1177850 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15376.64 Da        Isoelectric Point: 10.4871

>NTDB_id=830449 OH685_RS05670 WP_017387615.1 1172530..1172934(+) (comEA) [Acinetobacter pittii strain SO1]
MQLSMNLWKNKHNIFIILFWSLISSTLVQAQSFDQNFKEWKAKQQMYDQKLSMQHSSHSSVTKSSGMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=830449 OH685_RS05670 WP_017387615.1 1172530..1172934(+) (comEA) [Acinetobacter pittii strain SO1]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCAACGCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTAAGCATGC
AACATTCCTCTCATTCTAGTGTTACAAAAAGCTCAGGCATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAACTTCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429KDB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

67.883

100

0.694
  comEA Acinetobacter baumannii D1279779

67.883

100

0.694
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396