Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OH685_RS04420 Genome accession   NZ_CP125227
Coordinates   899603..900463 (-) Length   286 a.a.
NCBI ID   WP_282463836.1    Uniprot ID   -
Organism   Acinetobacter pittii strain SO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 894603..905463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS04395 (OH685_04430) - 895493..896803 (+) 1311 WP_282463834.1 tetratricopeptide repeat protein -
  OH685_RS04400 (OH685_04435) - 896880..897206 (+) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  OH685_RS04405 (OH685_04440) rlmB 897309..898058 (+) 750 WP_016142380.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OH685_RS04410 (OH685_04445) - 898094..899008 (+) 915 WP_282463835.1 DMT family transporter -
  OH685_RS04415 (OH685_04450) coaE 899005..899601 (-) 597 WP_005065869.1 dephospho-CoA kinase -
  OH685_RS04420 (OH685_04455) pilD 899603..900463 (-) 861 WP_282463836.1 A24 family peptidase Machinery gene
  OH685_RS04425 (OH685_04460) pilC 900463..901689 (-) 1227 WP_005079343.1 type II secretion system F family protein Machinery gene
  OH685_RS04430 (OH685_04465) pilB 901716..903428 (-) 1713 WP_282463837.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OH685_RS04435 (OH685_04470) tpiA 903720..904514 (+) 795 WP_282463838.1 triose-phosphate isomerase -
  OH685_RS04440 (OH685_04475) secG 904527..904856 (+) 330 WP_032005670.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32312.79 Da        Isoelectric Point: 7.1788

>NTDB_id=830441 OH685_RS04420 WP_282463836.1 899603..900463(-) (pilD) [Acinetobacter pittii strain SO1]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLMLRGKCGHCQHPISFRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNRPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=830441 OH685_RS04420 WP_282463836.1 899603..900463(-) (pilD) [Acinetobacter pittii strain SO1]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTAGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCAGAGTGTCATCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CTTTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGCCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGCATTAATACCTTTAATATCTACACCTCGCCTAACTCAGCTATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTACTTGCCGCATTAGGGGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTGCGTAATGATAATCGGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

95.804

100

0.958
  pilD Acinetobacter baumannii D1279779

95.455

100

0.955
  pilD Vibrio cholerae strain A1552

53.309

95.105

0.507
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.328

91.608

0.434