Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OH685_RS01105 Genome accession   NZ_CP125227
Coordinates   211750..212277 (-) Length   175 a.a.
NCBI ID   WP_002116864.1    Uniprot ID   A0AAN4MGG3
Organism   Acinetobacter pittii strain SO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 206750..217277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS01085 (OH685_01090) - 206959..207828 (-) 870 WP_126645968.1 hypothetical protein -
  OH685_RS01090 (OH685_01095) aroB 207845..208927 (-) 1083 WP_126645969.1 3-dehydroquinate synthase -
  OH685_RS01095 (OH685_01100) aroK 208956..209525 (-) 570 WP_002116987.1 shikimate kinase AroK -
  OH685_RS01100 (OH685_01105) pilQ 209537..211687 (-) 2151 WP_130119886.1 type IV pilus secretin PilQ family protein Machinery gene
  OH685_RS01105 (OH685_01110) pilP 211750..212277 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  OH685_RS01110 (OH685_01115) pilO 212288..213040 (-) 753 WP_060464993.1 type 4a pilus biogenesis protein PilO Machinery gene
  OH685_RS01115 (OH685_01120) pilN 213037..213678 (-) 642 WP_005067080.1 PilN domain-containing protein Machinery gene
  OH685_RS01120 (OH685_01125) pilM 213678..214736 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19265.32 Da        Isoelectric Point: 9.0270

>NTDB_id=830427 OH685_RS01105 WP_002116864.1 211750..212277(-) (pilP) [Acinetobacter pittii strain SO1]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=830427 OH685_RS01105 WP_002116864.1 211750..212277(-) (pilP) [Acinetobacter pittii strain SO1]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATCTGGTGGAGATTGTTCCTGATGGACGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88.571

100

0.886
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709