Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OH685_RS01115 Genome accession   NZ_CP125227
Coordinates   213037..213678 (-) Length   213 a.a.
NCBI ID   WP_005067080.1    Uniprot ID   -
Organism   Acinetobacter pittii strain SO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 208037..218678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS01095 (OH685_01100) aroK 208956..209525 (-) 570 WP_002116987.1 shikimate kinase AroK -
  OH685_RS01100 (OH685_01105) pilQ 209537..211687 (-) 2151 WP_130119886.1 type IV pilus secretin PilQ family protein Machinery gene
  OH685_RS01105 (OH685_01110) pilP 211750..212277 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  OH685_RS01110 (OH685_01115) pilO 212288..213040 (-) 753 WP_060464993.1 type 4a pilus biogenesis protein PilO Machinery gene
  OH685_RS01115 (OH685_01120) pilN 213037..213678 (-) 642 WP_005067080.1 PilN domain-containing protein Machinery gene
  OH685_RS01120 (OH685_01125) pilM 213678..214736 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  OH685_RS01125 (OH685_01130) ponA 214898..217459 (+) 2562 WP_130119888.1 penicillin-binding protein PBP1a -
  OH685_RS01130 (OH685_01135) rrmA 217475..218299 (-) 825 WP_282463662.1 putative RNA methyltransferase -
  OH685_RS01135 (OH685_01140) - 218302..218634 (-) 333 WP_068563962.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23908.31 Da        Isoelectric Point: 5.1162

>NTDB_id=830429 OH685_RS01115 WP_005067080.1 213037..213678(-) (pilN) [Acinetobacter pittii strain SO1]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLDDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=830429 OH685_RS01115 WP_005067080.1 213037..213678(-) (pilN) [Acinetobacter pittii strain SO1]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTAGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAGATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.671

100

0.897
  comN Acinetobacter baylyi ADP1

71.078

95.775

0.681