Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OH685_RS00985 Genome accession   NZ_CP125227
Coordinates   185240..186049 (-) Length   269 a.a.
NCBI ID   WP_213072887.1    Uniprot ID   -
Organism   Acinetobacter pittii strain SO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 180240..191049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS00970 (OH685_00975) pilE 180459..180884 (-) 426 WP_033848863.1 type IV pilin protein Machinery gene
  OH685_RS00975 (OH685_00980) pilY2 180881..181363 (-) 483 WP_033848865.1 type IV pilin protein Machinery gene
  OH685_RS00980 (OH685_00985) pilY1 181374..185228 (-) 3855 WP_282463656.1 PilC/PilY family type IV pilus protein Machinery gene
  OH685_RS00985 (OH685_00990) pilX 185240..186049 (-) 810 WP_213072887.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OH685_RS00990 (OH685_00995) pilW 186046..187047 (-) 1002 WP_069030422.1 PilW family protein Machinery gene
  OH685_RS00995 (OH685_01000) pilV 187047..187607 (-) 561 WP_126645790.1 type IV pilus modification protein PilV Machinery gene
  OH685_RS01000 (OH685_01005) fimU 187601..188074 (-) 474 WP_282463657.1 GspH/FimT family pseudopilin Machinery gene
  OH685_RS01005 (OH685_01010) ispH 188244..189194 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OH685_RS01010 (OH685_01015) gmk 189317..189946 (+) 630 WP_002116973.1 guanylate kinase -
  OH685_RS01015 (OH685_01020) rpoZ 190019..190297 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  OH685_RS01020 (OH685_01025) - 190336..190491 (+) 156 WP_014207816.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28517.32 Da        Isoelectric Point: 7.7238

>NTDB_id=830422 OH685_RS00985 WP_213072887.1 185240..186049(-) (pilX) [Acinetobacter pittii strain SO1]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYSNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=830422 OH685_RS00985 WP_213072887.1 185240..186049(-) (pilX) [Acinetobacter pittii strain SO1]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGTCAAGTGAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCGGTTGTTGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCTGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACGCAACGGATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGTTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATTCCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.338

100

0.903