Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   OH685_RS00975 Genome accession   NZ_CP125227
Coordinates   180881..181363 (-) Length   160 a.a.
NCBI ID   WP_033848865.1    Uniprot ID   A0A013SJ69
Organism   Acinetobacter pittii strain SO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 175881..186363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS00940 (OH685_00945) - 175966..176997 (+) 1032 WP_282463655.1 lipase secretion chaperone -
  OH685_RS00945 (OH685_00950) lip 177113..178054 (+) 942 WP_014207808.1 alpha/beta fold hydrolase -
  OH685_RS00950 (OH685_00955) rplS 178106..178474 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  OH685_RS00955 (OH685_00960) trmD 178694..179449 (-) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OH685_RS00960 (OH685_00965) rimM 179492..180040 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  OH685_RS00965 (OH685_00970) rpsP 180060..180311 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  OH685_RS00970 (OH685_00975) pilE 180459..180884 (-) 426 WP_033848863.1 type IV pilin protein Machinery gene
  OH685_RS00975 (OH685_00980) pilY2 180881..181363 (-) 483 WP_033848865.1 type IV pilin protein Machinery gene
  OH685_RS00980 (OH685_00985) pilY1 181374..185228 (-) 3855 WP_282463656.1 PilC/PilY family type IV pilus protein Machinery gene
  OH685_RS00985 (OH685_00990) pilX 185240..186049 (-) 810 WP_213072887.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17550.79 Da        Isoelectric Point: 8.4721

>NTDB_id=830420 OH685_RS00975 WP_033848865.1 180881..181363(-) (pilY2) [Acinetobacter pittii strain SO1]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNTAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=830420 OH685_RS00975 WP_033848865.1 180881..181363(-) (pilY2) [Acinetobacter pittii strain SO1]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAACTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTAACGAATACTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCGGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013SJ69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

40.113

100

0.444