Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   OH685_RS01000 Genome accession   NZ_CP125227
Coordinates   187601..188074 (-) Length   157 a.a.
NCBI ID   WP_282463657.1    Uniprot ID   -
Organism   Acinetobacter pittii strain SO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182601..193074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS00985 (OH685_00990) pilX 185240..186049 (-) 810 WP_213072887.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OH685_RS00990 (OH685_00995) pilW 186046..187047 (-) 1002 WP_069030422.1 PilW family protein Machinery gene
  OH685_RS00995 (OH685_01000) pilV 187047..187607 (-) 561 WP_126645790.1 type IV pilus modification protein PilV Machinery gene
  OH685_RS01000 (OH685_01005) fimU 187601..188074 (-) 474 WP_282463657.1 GspH/FimT family pseudopilin Machinery gene
  OH685_RS01005 (OH685_01010) ispH 188244..189194 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OH685_RS01010 (OH685_01015) gmk 189317..189946 (+) 630 WP_002116973.1 guanylate kinase -
  OH685_RS01015 (OH685_01020) rpoZ 190019..190297 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  OH685_RS01020 (OH685_01025) - 190336..190491 (+) 156 WP_014207816.1 hypothetical protein -
  OH685_RS01025 (OH685_01030) spoT 190507..192612 (+) 2106 WP_002116807.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16938.68 Da        Isoelectric Point: 7.7942

>NTDB_id=830425 OH685_RS01000 WP_282463657.1 187601..188074(-) (fimU) [Acinetobacter pittii strain SO1]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMLNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=830425 OH685_RS01000 WP_282463657.1 187601..188074(-) (fimU) [Acinetobacter pittii strain SO1]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTTGAATTTATTAGAAAGCAAACGACTAGATGGAAATCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCACCCAAGACACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879