Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   QMA75_RS01620 Genome accession   NZ_CP125225
Coordinates   343480..343953 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain EGA10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338480..348953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA75_RS01595 (QMA75_01595) - 338943..341048 (-) 2106 WP_001117590.1 HD domain-containing protein -
  QMA75_RS01600 (QMA75_01600) - 341088..341218 (-) 131 Protein_305 hypothetical protein -
  QMA75_RS01605 (QMA75_01605) rpoZ 341257..341535 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QMA75_RS01610 (QMA75_01610) gmk 341608..342237 (-) 630 WP_000015937.1 guanylate kinase -
  QMA75_RS01615 (QMA75_01615) ispH 342360..343310 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QMA75_RS01620 (QMA75_01620) fimU 343480..343953 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  QMA75_RS01625 (QMA75_01625) pilV 343947..344507 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  QMA75_RS01630 (QMA75_01630) pilW 344508..345509 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  QMA75_RS01635 (QMA75_01635) pilX 345506..346324 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=830377 QMA75_RS01620 WP_001214065.1 343480..343953(+) (fimU) [Acinetobacter baumannii strain EGA10]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=830377 QMA75_RS01620 WP_001214065.1 343480..343953(+) (fimU) [Acinetobacter baumannii strain EGA10]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1