Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H7678_RS09125 Genome accession   NZ_AP023393
Coordinates   1859835..1860326 (-) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 89     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1854835..1865326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7678_RS09110 (SDSE89_17750) - 1857612..1858556 (+) 945 WP_003059456.1 magnesium transporter CorA family protein -
  H7678_RS09115 (SDSE89_17760) - 1858688..1859344 (+) 657 WP_003059462.1 DUF1129 domain-containing protein -
  H7678_RS09120 (SDSE89_17770) rpsR 1859477..1859716 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  H7678_RS09125 (SDSE89_17780) ssbA 1859835..1860326 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  H7678_RS09130 (SDSE89_17790) rpsF 1860348..1860638 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  H7678_RS10800 - 1861597..1861890 (-) 294 WP_014612572.1 hypothetical protein -
  H7678_RS09135 (SDSE89_17800) mutY 1862055..1863221 (+) 1167 WP_003060012.1 A/G-specific adenine glycosylase -
  H7678_RS09140 (SDSE89_17810) trxA 1863272..1863586 (-) 315 WP_003052691.1 thioredoxin -
  H7678_RS09145 (SDSE89_17820) - 1863813..1865132 (+) 1320 WP_003055162.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=83021 H7678_RS09125 WP_002993238.1 1859835..1860326(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=83021 H7678_RS09125 WP_002993238.1 1859835..1860326(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGCATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment