NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	QLH56_RS08190	Genome accession	NZ_CP125107
Coordinates	1696448..1697038 (+)	Length	196 a.a.
NCBI ID	WP_003101547.1	Uniprot ID	-
Organism	Streptococcus iniae strain DFSM220524
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1691448..1702038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QLH56_RS08175 (QLH56_08175)	-	1692261..1693706 (-)	1446	WP_003101555.1	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	-
QLH56_RS08180 (QLH56_08180)	-	1693794..1695446 (+)	1653	WP_003101552.1	polysaccharide biosynthesis protein	-
QLH56_RS08185 (QLH56_08185)	upp	1695591..1696220 (+)	630	WP_003101549.1	uracil phosphoribosyltransferase	-
QLH56_RS08190 (QLH56_08190)	clpP	1696448..1697038 (+)	591	WP_003101547.1	ATP-dependent Clp protease proteolytic subunit	Regulator
QLH56_RS08195 (QLH56_08195)	-	1697160..1697405 (+)	246	WP_003101546.1	hypothetical protein	-
QLH56_RS08200 (QLH56_08200)	-	1697534..1698004 (+)	471	WP_016356100.1	YlbF family regulator	-
QLH56_RS08205 (QLH56_08205)	-	1697980..1698258 (+)	279	WP_003101541.1	YlbG family protein	-
QLH56_RS08210 (QLH56_08210)	-	1698397..1699569 (+)	1173	WP_003101539.1	ABC transporter substrate-binding protein	-
QLH56_RS08215 (QLH56_08215)	-	1699629..1700498 (+)	870	WP_016356099.1	branched-chain amino acid ABC transporter permease	-
QLH56_RS08220 (QLH56_08220)	-	1700502..1701455 (+)	954	WP_016356098.1	branched-chain amino acid ABC transporter permease	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21691.01 Da Isoelectric Point: 6.6494

                                >NTDB_id=829980 QLH56_RS08190 WP_003101547.1 1696448..1697038(+) (clpP) [Streptococcus iniae strain DFSM220524]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDHTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILAKNSGK

TIKQVHKDAERDYWMSAEETLKYGFIDEIMENNKLK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=829980 QLH56_RS08190 WP_003101547.1 1696448..1697038(+) (clpP) [Streptococcus iniae strain DFSM220524]

ATGATTCCTGTAGTTATTGAACAAACAAGTCGTGGGGAGCGTTCTTACGATATTTACTCTCGTTTACTAAAAGATCGGAT

CATCATGTTAACTGGTCCGGTCGAAGACAATATGGCTAACTCTGTCATTGCACAGTTGCTTTTTTTGGATGCACAAGATC

ACACTAAAGATATTTATCTTTATGTTAATACCCCAGGTGGTTCCGTTTCTGCTGGTTTAGCCATTGTTGATACAATGAAC

TTTATTAAATCTGATGTTCAAACAATTGTCATGGGAATGGCTGCTTCCATGGGAACAATCATTGCCTCATCAGGGACTAA

AGGGAAACGGTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACAGGTGGTGGTACGCAGCAAT

CAGATATGGCAATTGCTGCTGAACATCTCTTAAAAACACGTCACACTCTTGAAAAAATATTGGCAAAAAATAGTGGAAAA

ACCATTAAACAAGTTCATAAAGATGCAGAACGTGATTATTGGATGAGTGCAGAAGAAACACTAAAATATGGCTTCATTGA

TGAAATTATGGAAAATAACAAACTTAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes MGAS315	94.898	100	0.949
clpP	Streptococcus pyogenes JRS4	94.898	100	0.949
clpP	Streptococcus mutans UA159	91.837	100	0.918
clpP	Streptococcus thermophilus LMD-9	90.816	100	0.908
clpP	Streptococcus thermophilus LMG 18311	90.816	100	0.908
clpP	Streptococcus pneumoniae Rx1	90.306	100	0.903
clpP	Streptococcus pneumoniae D39	90.306	100	0.903
clpP	Streptococcus pneumoniae R6	90.306	100	0.903
clpP	Streptococcus pneumoniae TIGR4	90.306	100	0.903
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	85.714	100	0.857
clpP	Lactococcus lactis subsp. cremoris KW2	85.204	100	0.852
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.477	98.469	0.556
clpP	Bacillus subtilis subsp. subtilis str. 168	56.842	96.939	0.551

Detailed information NTG0829980