Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   QLH56_RS07775 Genome accession   NZ_CP125107
Coordinates   1620079..1620555 (+) Length   158 a.a.
NCBI ID   WP_003101723.1    Uniprot ID   -
Organism   Streptococcus iniae strain DFSM220524     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615079..1625555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH56_RS07775 (QLH56_07775) comX/sigX/comX2/sigX2 1620079..1620555 (+) 477 WP_003101723.1 sigma-70 family RNA polymerase sigma factor Regulator
  QLH56_RS07780 (QLH56_07780) - 1620661..1621188 (+) 528 WP_003101721.1 YqeG family HAD IIIA-type phosphatase -
  QLH56_RS07785 (QLH56_07785) yqeH 1621188..1622306 (+) 1119 WP_003101717.1 ribosome biogenesis GTPase YqeH -
  QLH56_RS07790 (QLH56_07790) yhbY 1622372..1622680 (+) 309 WP_016356114.1 ribosome assembly RNA-binding protein YhbY -
  QLH56_RS07795 (QLH56_07795) - 1622737..1623369 (+) 633 WP_003101712.1 nicotinate-nucleotide adenylyltransferase -
  QLH56_RS07800 (QLH56_07800) yqeK 1623366..1623959 (+) 594 WP_003101710.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QLH56_RS07805 (QLH56_07805) rsfS 1623967..1624320 (+) 354 WP_003101708.1 ribosome silencing factor -
  QLH56_RS07810 (QLH56_07810) - 1624381..1625121 (+) 741 WP_003101706.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19006.03 Da        Isoelectric Point: 9.3137

>NTDB_id=829978 QLH56_RS07775 WP_003101723.1 1620079..1620555(+) (comX/sigX/comX2/sigX2) [Streptococcus iniae strain DFSM220524]
MEKVESLFNSVKPIILKFQKRYYIQLWDKEDWLQEGRVVLHALLTEFPDLTENDKRLYTYFKTKFSSYIKDVLRHQESYK
RKFNKMPYEEIGEVSHKVASKGLVLDDYIAYQAIVEELKCILNGTELEQFYALVRGERFSGRKALLRKIKPYFIDFKE

Nucleotide


Download         Length: 477 bp        

>NTDB_id=829978 QLH56_RS07775 WP_003101723.1 1620079..1620555(+) (comX/sigX/comX2/sigX2) [Streptococcus iniae strain DFSM220524]
ATGGAAAAAGTTGAATCACTATTTAATTCAGTTAAACCAATTATTTTAAAATTTCAAAAACGTTATTATATACAACTTTG
GGATAAAGAAGACTGGTTACAAGAAGGTAGAGTTGTATTGCATGCTTTACTTACAGAATTTCCTGATTTGACAGAAAATG
ATAAAAGGCTTTATACATACTTTAAGACAAAATTTTCATCATATATTAAAGATGTCTTAAGACATCAAGAAAGTTACAAA
AGAAAGTTTAATAAAATGCCATATGAAGAAATCGGTGAAGTATCACATAAAGTTGCTTCAAAAGGATTAGTTCTTGATGA
TTATATTGCCTATCAAGCTATTGTTGAAGAATTGAAATGTATTTTGAATGGGACGGAATTAGAACAATTCTATGCTTTGG
TGAGAGGAGAAAGGTTTTCTGGAAGAAAAGCACTTCTTAGAAAAATTAAGCCATATTTTATTGATTTTAAAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

60.784

96.835

0.589
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

60.784

96.835

0.589
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

60.784

96.835

0.589
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

60.784

96.835

0.589
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

60.784

96.835

0.589
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

60.784

96.835

0.589
  comX/sigX Streptococcus mutans UA159

49.682

99.367

0.494
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

50.649

97.468

0.494
  comX Streptococcus sobrinus strain NIDR 6715-7

43.791

96.835

0.424
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

42.208

97.468

0.411
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

42.208

97.468

0.411
  comX/sigX Streptococcus suis P1/7

39.869

96.835

0.386
  comX/sigX Streptococcus suis D9

39.869

96.835

0.386
  comX/sigX Streptococcus suis isolate S10

39.869

96.835

0.386
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

39.333

94.937

0.373
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

38.411

95.57

0.367
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

38.667

94.937

0.367
  comX/comX2 Streptococcus pneumoniae Rx1

37.255

96.835

0.361
  comX/comX1 Streptococcus pneumoniae Rx1

37.255

96.835

0.361
  comX/comX2 Streptococcus pneumoniae D39

37.255

96.835

0.361
  comX/comX1 Streptococcus pneumoniae D39

37.255

96.835

0.361
  comX/comX2 Streptococcus pneumoniae R6

37.255

96.835

0.361
  comX/comX1 Streptococcus pneumoniae R6

37.255

96.835

0.361
  comX/comX2 Streptococcus pneumoniae TIGR4

37.255

96.835

0.361
  comX/comX1 Streptococcus pneumoniae TIGR4

37.255

96.835

0.361