Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QLH56_RS02895 Genome accession   NZ_CP125107
Coordinates   617994..619064 (-) Length   356 a.a.
NCBI ID   WP_031239151.1    Uniprot ID   A0A3L8GMR4
Organism   Streptococcus iniae strain DFSM220524     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 612994..624064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH56_RS02885 (QLH56_02885) - 615448..616613 (+) 1166 Protein_560 IS30-like element ISSag9 family transposase -
  QLH56_RS02890 (QLH56_02890) amiF 617078..618001 (-) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator
  QLH56_RS02895 (QLH56_02895) amiE 617994..619064 (-) 1071 WP_031239151.1 ABC transporter ATP-binding protein Regulator
  QLH56_RS02900 (QLH56_02900) amiD 619070..619996 (-) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  QLH56_RS02905 (QLH56_02905) amiC 619996..621495 (-) 1500 WP_003100862.1 ABC transporter permease Regulator
  QLH56_RS02910 (QLH56_02910) amiA3 621560..623539 (-) 1980 WP_003100861.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40031.06 Da        Isoelectric Point: 5.9482

>NTDB_id=829945 QLH56_RS02895 WP_031239151.1 617994..619064(-) (amiE) [Streptococcus iniae strain DFSM220524]
MMENKEIILSAKNVVVEFDVRDRILTAIRDISVDLYEGEVLAVVGESGSGKSVLTKTFTGMLESNGRVAKGSINYRGKEL
TELKNHKDWEGIRGAKIATIFQDPMTSLDPIQTIGRQITEVIVKHQKKTKSEAKKLAIDYMNKVGIPEAEKRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQKEYQFTIIFITHDLGVVASIATNVAVMYAGEIVE
YGTVEDIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMTIDFEENVPRFEINGTHWAK
TWLLHPDAPKVQKPEVIRNLHDKISSKQIYREEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=829945 QLH56_RS02895 WP_031239151.1 617994..619064(-) (amiE) [Streptococcus iniae strain DFSM220524]
ATCATGGAAAACAAAGAAATTATTTTAAGTGCTAAAAATGTTGTCGTTGAATTTGACGTTCGTGACCGTATTTTGACAGC
GATTCGTGATATTTCCGTTGATTTATATGAAGGTGAAGTCCTTGCGGTTGTTGGAGAATCTGGTAGTGGAAAATCAGTGT
TGACCAAAACATTTACGGGGATGTTAGAATCTAACGGTCGTGTTGCCAAGGGTTCAATTAATTACCGCGGTAAAGAATTA
ACTGAATTAAAAAATCACAAAGATTGGGAAGGAATCCGTGGTGCTAAAATTGCAACCATATTCCAAGATCCAATGACAAG
TTTGGATCCAATCCAAACTATCGGAAGACAAATTACAGAAGTTATTGTCAAACATCAAAAGAAAACAAAATCAGAAGCTA
AAAAATTGGCCATTGATTACATGAATAAAGTTGGGATTCCAGAAGCAGAAAAACGTTTTGATGAATACCCATTTCAGTAT
TCGGGTGGTATGCGCCAACGTATTGTTATTGCAATTGCTCTAGCTTGTCGCCCAGACATCCTTATTTGTGATGAGCCAAC
AACTGCTCTAGATGTAACTATTCAGGCGCAAATTATTGATCTGCTAAAAACGCTCCAAAAAGAATATCAATTCACCATTA
TTTTTATTACCCATGATTTAGGCGTAGTAGCAAGTATTGCAACCAATGTTGCAGTTATGTATGCTGGTGAAATTGTTGAG
TATGGAACTGTTGAAGATATCTTTTATGATCCAAGACATCCATATACTTGGAGTTTGCTTTCAAGTTTGCCACAATTAGC
CGATGAAAAAGGTGTCTTATTCTCCATTCCAGGAACACCACCATCATTGTATAAACCGATTGTTGGCGATGCATTTGCTC
CAAGATCTCAGTATGCAATGACAATTGATTTTGAAGAGAATGTTCCAAGGTTTGAAATTAATGGGACACATTGGGCAAAG
ACATGGTTGCTTCATCCAGATGCACCAAAAGTGCAAAAGCCAGAAGTCATTCGAAATCTTCATGACAAAATTTCAAGTAA
ACAAATCTATCGGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-300)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GMR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

78.333

100

0.792
  amiE Streptococcus thermophilus LMG 18311

77.778

100

0.787
  amiE Streptococcus thermophilus LMD-9

77.778

100

0.787
  oppD Streptococcus mutans UA159

56.232

96.91

0.545