Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QMA14_RS00055 Genome accession   NZ_CP125087
Coordinates   11285..11953 (-) Length   222 a.a.
NCBI ID   WP_005695555.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6285..16953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS00035 (QMA14_00035) - 6595..7461 (-) 867 WP_284173934.1 MurR/RpiR family transcriptional regulator -
  QMA14_RS00040 (QMA14_00040) - 7454..8392 (-) 939 WP_005695558.1 N-acetylmannosamine kinase -
  QMA14_RS00045 (QMA14_00045) - 8404..9093 (-) 690 WP_005698367.1 N-acetylmannosamine-6-phosphate 2-epimerase -
  QMA14_RS00050 (QMA14_00050) nagE 9311..10777 (+) 1467 WP_284173935.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  QMA14_RS00055 (QMA14_00055) crp 11285..11953 (-) 669 WP_005695555.1 cAMP-activated global transcriptional regulator CRP Regulator
  QMA14_RS00060 (QMA14_00060) - 11970..12188 (-) 219 WP_005695554.1 YheU family protein -
  QMA14_RS00065 (QMA14_00065) slmA 12210..12863 (-) 654 WP_284173936.1 nucleoid occlusion factor SlmA -
  QMA14_RS00070 (QMA14_00070) dut 12867..13322 (-) 456 WP_005695552.1 dUTP diphosphatase -
  QMA14_RS00075 (QMA14_00075) coaBC 13396..14598 (-) 1203 WP_065243005.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  QMA14_RS00080 (QMA14_00080) radC 14801..15466 (+) 666 WP_005695550.1 DNA repair protein RadC -
  QMA14_RS00085 (QMA14_00085) rpmB 15685..15921 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  QMA14_RS00090 (QMA14_00090) rpmG 15933..16103 (+) 171 WP_005613503.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25131.91 Da        Isoelectric Point: 6.6936

>NTDB_id=829878 QMA14_RS00055 WP_005695555.1 11285..11953(-) (crp) [Haemophilus parainfluenzae strain EL1]
MSEDVELLEEQKPQDDDQQRDPALDWFLTHCHLHKYPAKSTLIHAGEDANILYFLIKGTVMVSSKDDEGKEMILSYLGAG
QFFGEAGLFDEGSKRSAWVKTKTPCEIAEISYKKYRQLIQINPEILMFLTAQLSKRLQNTSRQVTNLAFLDVAGRIAQAL
MHLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGTR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=829878 QMA14_RS00055 WP_005695555.1 11285..11953(-) (crp) [Haemophilus parainfluenzae strain EL1]
ATGTCAGAAGATGTAGAATTACTAGAAGAACAAAAGCCGCAGGACGATGATCAGCAGCGCGATCCTGCTCTGGATTGGTT
CCTTACTCACTGTCATTTACATAAATATCCAGCAAAATCGACCTTAATTCATGCGGGTGAAGATGCCAATATTTTATATT
TCTTAATTAAAGGAACCGTGATGGTTTCATCGAAAGATGATGAAGGCAAAGAGATGATTTTATCTTATTTAGGTGCCGGA
CAATTTTTTGGTGAAGCGGGTTTATTTGATGAAGGCTCGAAACGTTCTGCTTGGGTGAAAACGAAAACGCCTTGTGAAAT
TGCGGAAATTTCCTATAAAAAATATCGTCAGCTGATTCAAATTAATCCTGAAATTTTAATGTTCCTTACTGCTCAGTTAT
CAAAACGCTTGCAAAATACATCGCGACAAGTGACTAACTTGGCCTTTTTAGATGTGGCAGGACGTATTGCTCAGGCGCTT
ATGCATTTAGCAAAACAACCTGAAGCGATGACGCATCCTGATGGTATGCAGATTAAAATTACACGTCAGGAAATCGGTCA
AATGGTAGGGTGCTCGCGTGAAACCGTAGGGCGAATCATTAAGATGCTGGAAGATCAAAATTTAATCCATGCGCACGGCA
AAACCATTGTGGTTTACGGCACTCGATAG

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(34-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(154-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

86.607

100

0.874
  crp Vibrio cholerae strain A1552

73.529

91.892

0.676
  crp Acinetobacter baumannii D1279779

46.734

89.64

0.419