Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QLQ64_RS03470 | Genome accession | NZ_CP124956 |
| Coordinates | 643563..644090 (+) | Length | 175 a.a. |
| NCBI ID | WP_141416186.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain EfsC13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 636310..672046 | 643563..644090 | within | 0 |
Gene organization within MGE regions
Location: 636310..672046
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLQ64_RS03405 (QLQ64_03405) | - | 636310..637455 (-) | 1146 | WP_049097808.1 | site-specific integrase | - |
| QLQ64_RS03410 (QLQ64_03410) | - | 637502..637930 (-) | 429 | WP_010815585.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QLQ64_RS03415 (QLQ64_03415) | - | 637944..638378 (-) | 435 | WP_010815584.1 | helix-turn-helix domain-containing protein | - |
| QLQ64_RS03420 (QLQ64_03420) | - | 638660..638851 (+) | 192 | WP_010815583.1 | helix-turn-helix transcriptional regulator | - |
| QLQ64_RS03425 (QLQ64_03425) | - | 638855..639139 (+) | 285 | WP_010815582.1 | hypothetical protein | - |
| QLQ64_RS03430 (QLQ64_03430) | - | 639154..639864 (+) | 711 | WP_010826676.1 | Rha family transcriptional regulator | - |
| QLQ64_RS03435 (QLQ64_03435) | - | 639875..640060 (+) | 186 | WP_002364665.1 | hypothetical protein | - |
| QLQ64_RS03440 (QLQ64_03440) | - | 640072..640245 (+) | 174 | WP_267554315.1 | hypothetical protein | - |
| QLQ64_RS03445 (QLQ64_03445) | - | 640444..640566 (+) | 123 | WP_002414628.1 | hypothetical protein | - |
| QLQ64_RS03450 (QLQ64_03450) | - | 640550..641029 (+) | 480 | WP_002381628.1 | siphovirus Gp157 family protein | - |
| QLQ64_RS03455 (QLQ64_03455) | - | 641041..642057 (+) | 1017 | WP_002365157.1 | AAA family ATPase | - |
| QLQ64_RS03460 (QLQ64_03460) | - | 642062..642703 (+) | 642 | WP_010783684.1 | putative HNHc nuclease | - |
| QLQ64_RS03465 (QLQ64_03465) | - | 642707..643558 (+) | 852 | WP_002365159.1 | helix-turn-helix domain-containing protein | - |
| QLQ64_RS03470 (QLQ64_03470) | ssb | 643563..644090 (+) | 528 | WP_141416186.1 | single-stranded DNA-binding protein | Machinery gene |
| QLQ64_RS03475 (QLQ64_03475) | - | 644102..644431 (+) | 330 | WP_113826006.1 | hypothetical protein | - |
| QLQ64_RS03480 (QLQ64_03480) | - | 644451..644657 (+) | 207 | WP_267554308.1 | hypothetical protein | - |
| QLQ64_RS03485 (QLQ64_03485) | - | 644711..645175 (+) | 465 | WP_002389342.1 | class I SAM-dependent methyltransferase | - |
| QLQ64_RS03490 (QLQ64_03490) | - | 645177..645497 (+) | 321 | WP_016024806.1 | hypothetical protein | - |
| QLQ64_RS03495 (QLQ64_03495) | - | 645518..645928 (+) | 411 | WP_267554302.1 | YopX family protein | - |
| QLQ64_RS03500 (QLQ64_03500) | - | 645925..646092 (+) | 168 | WP_048948834.1 | hypothetical protein | - |
| QLQ64_RS03505 (QLQ64_03505) | - | 646085..646237 (+) | 153 | WP_205216913.1 | hypothetical protein | - |
| QLQ64_RS03510 (QLQ64_03510) | - | 646288..647025 (+) | 738 | WP_302514771.1 | DUF1642 domain-containing protein | - |
| QLQ64_RS03515 (QLQ64_03515) | - | 647029..647229 (+) | 201 | WP_002380820.1 | hypothetical protein | - |
| QLQ64_RS03520 (QLQ64_03520) | - | 647626..648117 (+) | 492 | WP_172499968.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| QLQ64_RS03530 (QLQ64_03530) | - | 648903..649352 (+) | 450 | WP_002403757.1 | helix-turn-helix domain-containing protein | - |
| QLQ64_RS03535 (QLQ64_03535) | - | 649349..650641 (+) | 1293 | WP_010826668.1 | hypothetical protein | - |
| QLQ64_RS03540 (QLQ64_03540) | - | 650730..652217 (+) | 1488 | WP_227660701.1 | phage portal protein | - |
| QLQ64_RS03545 (QLQ64_03545) | - | 652210..652380 (+) | 171 | WP_010826666.1 | hypothetical protein | - |
| QLQ64_RS03550 (QLQ64_03550) | - | 652393..653295 (+) | 903 | WP_025191021.1 | minor capsid protein | - |
| QLQ64_RS03555 (QLQ64_03555) | - | 653297..653494 (+) | 198 | WP_010826664.1 | hypothetical protein | - |
| QLQ64_RS03560 (QLQ64_03560) | - | 653472..653819 (+) | 348 | WP_010826663.1 | hypothetical protein | - |
| QLQ64_RS03565 (QLQ64_03565) | - | 653916..654557 (+) | 642 | WP_010826662.1 | DUF4355 domain-containing protein | - |
| QLQ64_RS03570 (QLQ64_03570) | - | 654570..655547 (+) | 978 | WP_010826661.1 | hypothetical protein | - |
| QLQ64_RS03575 (QLQ64_03575) | - | 655562..655945 (+) | 384 | WP_010708427.1 | phage head-tail connector protein | - |
| QLQ64_RS03580 (QLQ64_03580) | - | 655942..656220 (+) | 279 | WP_010826660.1 | hypothetical protein | - |
| QLQ64_RS03585 (QLQ64_03585) | - | 656217..656564 (+) | 348 | WP_010826659.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| QLQ64_RS03590 (QLQ64_03590) | - | 656566..656922 (+) | 357 | WP_010826658.1 | hypothetical protein | - |
| QLQ64_RS03595 (QLQ64_03595) | - | 656934..657563 (+) | 630 | WP_267554205.1 | phage major tail protein, TP901-1 family | - |
| QLQ64_RS03600 (QLQ64_03600) | - | 657569..658477 (+) | 909 | WP_010826656.1 | hypothetical protein | - |
| QLQ64_RS03605 (QLQ64_03605) | - | 658456..658932 (+) | 477 | WP_010826655.1 | tail assembly chaperone | - |
| QLQ64_RS03610 (QLQ64_03610) | - | 658932..659246 (+) | 315 | WP_010826654.1 | hypothetical protein | - |
| QLQ64_RS03615 (QLQ64_03615) | - | 659251..663165 (+) | 3915 | WP_010826653.1 | tape measure protein | - |
| QLQ64_RS03620 (QLQ64_03620) | - | 663177..664031 (+) | 855 | WP_010708437.1 | phage tail domain-containing protein | - |
| QLQ64_RS03625 (QLQ64_03625) | - | 664045..666165 (+) | 2121 | WP_102990672.1 | phage tail protein | - |
| QLQ64_RS03630 (QLQ64_03630) | - | 666162..667652 (+) | 1491 | WP_267554199.1 | BppU family phage baseplate upper protein | - |
| QLQ64_RS03635 (QLQ64_03635) | - | 667732..667953 (+) | 222 | WP_002406118.1 | hypothetical protein | - |
| QLQ64_RS03640 (QLQ64_03640) | - | 667946..668179 (+) | 234 | WP_085383009.1 | phage holin | - |
| QLQ64_RS03645 (QLQ64_03645) | - | 668180..669481 (+) | 1302 | WP_156209085.1 | LysM peptidoglycan-binding domain-containing protein | - |
| QLQ64_RS03655 (QLQ64_03655) | - | 669833..670204 (-) | 372 | WP_010815578.1 | hypothetical protein | - |
| QLQ64_RS03660 (QLQ64_03660) | - | 670544..672046 (-) | 1503 | WP_002397067.1 | glucosyltransferase domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19312.21 Da Isoelectric Point: 4.7078
>NTDB_id=829752 QLQ64_RS03470 WP_141416186.1 643563..644090(+) (ssb) [Enterococcus faecalis strain EfsC13]
MINQVVLVGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNSSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINQVVLVGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNSSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=829752 QLQ64_RS03470 WP_141416186.1 643563..644090(+) (ssb) [Enterococcus faecalis strain EfsC13]
ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCAGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAACGAGAATAGAAATAGCATTCAGAGTTCGCAGAATAGCGTTACAGGCGTTCAAAATAATTTTGAGAGTAATTATG
CCACAAATCAAAACAAAGGCTTAAATCAGCAAAATAGCAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCAGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAACGAGAATAGAAATAGCATTCAGAGTTCGCAGAATAGCGTTACAGGCGTTCAAAATAATTTTGAGAGTAATTATG
CCACAAATCAAAACAAAGGCTTAAATCAGCAAAATAGCAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.989 |
100 |
0.6 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.865 |
100 |
0.589 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
60.571 |
0.366 |