Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   SJH97_RS07710 Genome accession   NZ_CP139175
Coordinates   1657516..1659675 (-) Length   719 a.a.
NCBI ID   WP_320584608.1    Uniprot ID   -
Organism   Streptomyces sp. CL7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1652516..1664675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS07695 (SJH97_07695) - 1653431..1654432 (-) 1002 WP_093766726.1 TerC family protein -
  SJH97_RS07700 (SJH97_07700) - 1654719..1656719 (-) 2001 WP_320584606.1 TerD family protein -
  SJH97_RS07705 (SJH97_07705) - 1656801..1657379 (-) 579 WP_320584607.1 TerD family protein -
  SJH97_RS07710 (SJH97_07710) uvrB 1657516..1659675 (-) 2160 WP_320584608.1 excinuclease ABC subunit UvrB Machinery gene
  SJH97_RS07715 (SJH97_07715) - 1659716..1660579 (-) 864 WP_228919753.1 MHYT domain-containing protein -
  SJH97_RS07720 (SJH97_07720) - 1660859..1661734 (+) 876 WP_320584609.1 glycerophosphodiester phosphodiesterase -
  SJH97_RS07725 (SJH97_07725) - 1661812..1662366 (+) 555 WP_320584610.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  SJH97_RS07730 (SJH97_07730) - 1662434..1662862 (-) 429 WP_320584611.1 VOC family protein -
  SJH97_RS07735 (SJH97_07735) - 1662960..1663871 (+) 912 WP_320584612.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 719 a.a.        Molecular weight: 80773.43 Da        Isoelectric Point: 4.7968

>NTDB_id=829522 SJH97_RS07710 WP_320584608.1 1657516..1659675(-) (uvrB) [Streptomyces sp. CL7]
MRPVSQIERTVAPFEVVSPYQPSGDQPAAIAELARRIEAGERDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGDEMDRDELLRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDRQLYVFPASHYVAGPERLERAVNDIEKELGERLSELEKQGKLLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDGRTPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQAVYL
SATPGQYELSRSDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRVEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIEETNRRREKQVAYNQANGIDPQPLRKKINDIVSQIAREDIDTEQLLGSGYRQAKKDGGGTRTPVPALG
GKAAKGAKSAKTTKGAKGKAAETVPTDRPAAELAEQIEELTARMRAAAADLQFEIAARLRDEVSEMKKELRQMQEAGLS

Nucleotide


Download         Length: 2160 bp        

>NTDB_id=829522 SJH97_RS07710 WP_320584608.1 1657516..1659675(-) (uvrB) [Streptomyces sp. CL7]
ATGCGGCCCGTTTCCCAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
CGCGGCCATCGCCGAGCTCGCCCGGCGTATCGAGGCCGGTGAGCGGGACGTCGTGCTGCTCGGCGCCACCGGCACCGGCA
AGTCGGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTCATGGCGCCGAACAAGACCCTGGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTCCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGCTGCGCCACT
CGGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTGGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTGCGCGTTGGCGACGAGATGGACCGCGACGAACTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACATGGCCTTCACCCGCGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACGCTGCACCCGCTCACCGGC
GAGATCATCAGCGACGACCGGCAGCTCTACGTCTTCCCCGCCTCCCACTACGTCGCCGGCCCCGAGCGGCTGGAGCGCGC
GGTCAACGACATCGAGAAGGAGCTCGGCGAGCGCCTCTCGGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGCATGCGGACCACGTACGACATCGAGATGCTCCGCCAGATCGGCACCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGTACGCCGGGCTCGCCGCCCAACACGCTGCTGGACTACTTCCCGGACGACTTCCTCCTCGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCGGCCCTGGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCGTCGGCCAGGCGGTGTACCTG
TCGGCCACCCCCGGCCAGTACGAGCTCTCCCGCTCGGACGGCTTCGTCGAGCAGATCATCCGCCCGACCGGACTCGTCGA
CCCCGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCACACGTGTGGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTCGAACTCGGCATCCAGGTG
CGGTACCTGCACAGCGACGTCGACACCCTGCGCCGGGTGGAGCTGCTGCGGGAGCTGCGCAGTGGCGAGTACGACGTCCT
GGTCGGGATCAACCTGCTGCGTGAGGGCCTCGACCTGCCCGAGGTCTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGGTCGGGCACCTCCCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACGCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGCGAGAAGCAGGTCGCGTACAACCA
GGCCAACGGCATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCTCGCAGATCGCCCGCGAGGACATCGACA
CCGAGCAGCTGCTCGGCTCGGGCTACCGCCAGGCCAAGAAGGACGGCGGCGGCACCAGGACGCCCGTGCCCGCCCTCGGC
GGCAAGGCCGCCAAGGGTGCGAAGAGCGCCAAGACCACCAAGGGCGCCAAGGGCAAGGCCGCCGAGACCGTGCCCACCGA
CCGCCCCGCGGCCGAACTCGCCGAGCAGATCGAGGAGCTCACCGCGCGCATGCGCGCAGCCGCCGCCGACCTGCAGTTCG
AGATCGCGGCACGGCTGCGCGACGAGGTGTCCGAGATGAAGAAGGAACTGAGGCAGATGCAGGAGGCGGGCCTGTCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(675-708)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB interaction domain (UvrB_inter)

(169-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

61.712

86.092

0.531
  uvrB Streptococcus pneumoniae R6

61.712

86.092

0.531
  uvrB Streptococcus pneumoniae D39

61.712

86.092

0.531