Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   SKB18_RS03825 Genome accession   NZ_CP139163
Coordinates   780824..782842 (-) Length   672 a.a.
NCBI ID   WP_012774967.1    Uniprot ID   A0A0H3N228
Organism   Streptococcus suis strain cnzyss2-311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 775824..787842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS03805 - 776529..777743 (-) 1215 WP_011921925.1 pyridoxal phosphate-dependent aminotransferase -
  SKB18_RS03810 - 777898..778350 (+) 453 WP_004195772.1 universal stress protein -
  SKB18_RS03815 - 778366..779731 (-) 1366 Protein_744 Cof-type HAD-IIB family hydrolase -
  SKB18_RS03820 - 779801..780760 (+) 960 WP_011922637.1 asparaginase -
  SKB18_RS03825 recG/mmsA 780824..782842 (-) 2019 WP_012774967.1 ATP-dependent DNA helicase RecG Machinery gene

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75698.26 Da        Isoelectric Point: 6.2217

>NTDB_id=829447 SKB18_RS03825 WP_012774967.1 780824..782842(-) (recG/mmsA) [Streptococcus suis strain cnzyss2-311]
MKRLCDELSVLPGIGPKSAEKFLKISIQNINDLLTYYPFRYEDFESKSIYDLQDGEKAVVVGEVVSPANVQYYGYKRNRL
RFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGKWDKAKASLTGMKILAQVSDELQPVYHVAQGISQVNLVKAIKTAI
DQGYLHLLEENLPSVLRERYRLMNRREAVFAMHFPTNLEEYRQALRRMKFEELFYFQLQLQMLKANNRDILNGLKIAYDA
DRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFE
SLRQLFPELSIALLTGGMKAAERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNP
DVLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQVYFISPLIEESEALDLK
NAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKERKTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGHKQSYAVLVANPKTESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEAR
RVASQIVSVENWQEDPNWSILLANLKDREELD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=829447 SKB18_RS03825 WP_012774967.1 780824..782842(-) (recG/mmsA) [Streptococcus suis strain cnzyss2-311]
ATGAAAAGACTATGTGATGAATTATCGGTTTTGCCAGGGATTGGTCCAAAATCGGCTGAAAAATTCTTAAAAATTAGCAT
TCAGAATATTAATGATTTGCTGACTTACTATCCATTTAGATATGAAGATTTTGAGAGTAAGTCTATTTATGATTTGCAGG
ATGGGGAGAAGGCAGTGGTAGTTGGGGAGGTGGTATCTCCAGCTAATGTACAGTATTATGGTTACAAAAGAAATAGACTC
CGTTTTTCAATGAAACAGGGTGAGGTTGTCTTAGCAGTTTCGTTTTTTAATCAGCCTTATTTAGCAGATAAGATTGTTTT
GGGGCAGGATATTGCAGTTTGGGGAAAGTGGGATAAGGCTAAGGCAAGTTTGACAGGAATGAAAATTTTGGCTCAAGTAT
CAGATGAGCTCCAACCTGTCTATCATGTGGCGCAAGGGATTTCGCAAGTAAATTTGGTTAAGGCTATTAAAACAGCTATT
GATCAGGGATATTTGCATTTATTAGAGGAGAACTTGCCATCAGTTTTACGAGAGCGCTATCGGTTAATGAATCGCCGAGA
GGCGGTTTTTGCGATGCATTTTCCTACAAATTTAGAAGAGTATAGACAAGCTTTGCGACGTATGAAGTTTGAGGAATTAT
TTTATTTTCAATTACAGTTGCAAATGCTGAAAGCCAACAATCGTGATATTTTGAATGGTTTGAAGATTGCCTATGATGCT
GATAGATTGGCTATGCAAATAAGACAATTGCCGTTTGTCTTAACAGATGCTCAGTCTGGGGCTTTGGCTGAAATACTATC
AGATATGAAGTCCTATGGGCACATGAATCGTTTGTTACAAGGGGATGTTGGTTCAGGGAAGACAGTAGTTGCTGGATTGG
CTATGTTTGCTGCTGTGACTGCGGGGATGCAGGCTGCAATTATGGTGCCGACAGAAATTTTGGCTGAGCAACACTTTGAG
AGTTTGCGCCAGCTTTTTCCAGAACTTTCTATTGCTCTTTTGACAGGTGGAATGAAAGCTGCGGAGCGTCGTACTGCTTT
AGAGGCGATTTCTAGTGGTCAGGTAGACATCATTGTAGGAACTCATGCTCTTATACAGGAAAGTGTGACGTACCATAAGC
TTGGTTTGGTTGTGACGGATGAGCAACATCGTTTTGGTGTTAAACAGCGCCGTCTGTTTCGTGAGAAGGGTGATAATCCG
GATGTGCTTATGATGACTGCTACACCTATTCCTCGGACGTTAGCCATTACAGCTTTTGGAGATATGGATGTATCAATTAT
TAATCAGTTACCTGCTGGTCGAAAGCCAATTATCACTCGCTGGGTCAAACATCAACAGCTGCCCACGGTCTTAGATTGGT
TGGAGCGGGAGTTAGAAGTGGGTGCTCAGGTTTATTTTATCTCTCCGCTGATTGAAGAATCTGAGGCTCTAGATTTAAAG
AATGCTGTAGATCTACAATCTGATTTACAGGCGCATTTTGGAGAGCAAGTTACAGTGGATTTGTTACACGGTAAGATGAA
GAATGACGAGAAAGATGCCATCATGCAGGCTTTTAAGGAGCGAAAAACGAATATTTTGGTTTCTACCACTGTTATTGAAG
TCGGAGTCAATGTGCCCAATGCAACGGTGATGGTTATTATGGATGCTGATCGTTTTGGTTTAAGCCAATTACATCAGTTG
AGAGGGCGTGTAGGACGTGGTCATAAGCAGTCTTATGCAGTGTTAGTTGCTAATCCTAAAACAGAGTCTGGTAAGGAACG
CATGAAAATTATGACAGAGACGACAGATGGTTTTATTTTGGCTGAAGCTGACTTAAAAATGCGTGGGTCTGGAGAAATAT
TTGGAACTCGTCAATCAGGTTTGCCAGAATTTCAAGTTGCAAATATTATCGAGGACTATCCAATTTTAGAGGAAGCAAGG
CGAGTTGCTAGTCAGATTGTTAGCGTGGAAAATTGGCAGGAGGACCCTAATTGGTCGATTTTGCTTGCTAATTTGAAAGA
TCGAGAGGAATTGGACTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(459-567)

DEAD/DEAH box helicase (DEAD)

(255-410)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

RecG wedge domain (RecG_wedge)

(13-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N228

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

72.347

99.554

0.72
  recG/mmsA Streptococcus pneumoniae R36A

72.347

99.554

0.72
  recG Bacillus subtilis subsp. subtilis str. 168

48.939

98.214

0.481
  recG Neisseria meningitidis strain C311

39.877

97.024

0.387