Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   SID94_RS01800 Genome accession   NZ_CP139039
Coordinates   396978..397610 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli MP1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 391978..402610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SID94_RS01775 (SID94_01775) yhfG 392111..392278 (+) 168 WP_000736858.1 YhfG family protein -
  SID94_RS01780 (SID94_01780) fic 392268..392870 (+) 603 WP_001280654.1 putative adenosine monophosphate-protein transferase Fic -
  SID94_RS01785 (SID94_01785) pabA 392902..393465 (+) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  SID94_RS01790 (SID94_01790) argD 393551..394774 (+) 1224 WP_001765220.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  SID94_RS01795 (SID94_01795) yhfK 394837..396927 (-) 2091 WP_032286836.1 YccS/YhfK family putative transporter -
  SID94_RS01800 (SID94_01800) crp 396978..397610 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  SID94_RS01805 (SID94_01805) yhfA 397912..398316 (+) 405 WP_001148908.1 OsmC family protein -
  SID94_RS01810 (SID94_01810) prkB 398371..399240 (-) 870 WP_001274684.1 phosphoribulokinase -
  SID94_RS01815 (SID94_01815) yheU 399294..399512 (-) 219 WP_000907085.1 YheU family protein -
  SID94_RS01820 (SID94_01820) yheT 399506..400528 (-) 1023 WP_000057415.1 hydrolase -
  SID94_RS01825 (SID94_01825) yheS 400528..402441 (-) 1914 WP_001765221.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=829098 SID94_RS01800 WP_000242755.1 396978..397610(-) (crp) [Escherichia coli MP1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=829098 SID94_RS01800 WP_000242755.1 396978..397610(-) (crp) [Escherichia coli MP1]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467