Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QKW11_RS12335 Genome accession   NZ_CP124851
Coordinates   2565131..2565466 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain SF305     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2560131..2570466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKW11_RS12315 (QKW11_12310) gcvT 2560737..2561837 (-) 1101 WP_031378949.1 glycine cleavage system aminomethyltransferase GcvT -
  QKW11_RS12320 (QKW11_12315) - 2562261..2563931 (+) 1671 WP_015417810.1 DEAD/DEAH box helicase -
  QKW11_RS12325 (QKW11_12320) - 2563953..2564747 (+) 795 WP_156240427.1 YqhG family protein -
  QKW11_RS12330 (QKW11_12325) sinI 2564924..2565097 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  QKW11_RS12335 (QKW11_12330) sinR 2565131..2565466 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  QKW11_RS12340 (QKW11_12335) tasA 2565514..2566299 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  QKW11_RS12345 (QKW11_12340) sipW 2566364..2566948 (-) 585 WP_015240205.1 signal peptidase I SipW -
  QKW11_RS12350 (QKW11_12345) tapA 2566920..2567591 (-) 672 WP_113766732.1 amyloid fiber anchoring/assembly protein TapA -
  QKW11_RS12355 (QKW11_12350) - 2567850..2568179 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  QKW11_RS12360 (QKW11_12355) - 2568220..2568399 (-) 180 WP_003153093.1 YqzE family protein -
  QKW11_RS12365 (QKW11_12360) comGG 2568456..2568833 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  QKW11_RS12370 (QKW11_12365) comGF 2568834..2569334 (-) 501 WP_256683588.1 competence type IV pilus minor pilin ComGF -
  QKW11_RS12375 (QKW11_12370) comGE 2569243..2569557 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  QKW11_RS12380 (QKW11_12375) comGD 2569541..2569978 (-) 438 WP_256683589.1 competence type IV pilus minor pilin ComGD Machinery gene
  QKW11_RS12385 (QKW11_12380) comGC 2569968..2570276 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=828371 QKW11_RS12335 WP_003153104.1 2565131..2565466(+) (sinR) [Bacillus velezensis strain SF305]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=828371 QKW11_RS12335 WP_003153104.1 2565131..2565466(+) (sinR) [Bacillus velezensis strain SF305]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991