Detailed information NTG0827594

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QKA38_RS24970
• Genome accession: NZ_CP124669
• Coordinates: 5359658..5360530 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 2021CK-01494
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5354658..5365530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QKA38_RS24955 (QKA38_24955)	-	5356041..5356505 (-)	465	WP_023098059.1	pilin	-
QKA38_RS24960 (QKA38_24960)	pilB	5356736..5358436 (+)	1701	WP_023098060.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QKA38_RS24965 (QKA38_24965)	pilC	5358440..5359657 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
QKA38_RS24970 (QKA38_24970)	pilD	5359658..5360530 (+)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
QKA38_RS24975 (QKA38_24975)	coaE	5360527..5361138 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
QKA38_RS24980 (QKA38_24980)	yacG	5361135..5361335 (+)	201	WP_017148551.1	DNA gyrase inhibitor YacG	-
QKA38_RS24985 (QKA38_24985)	-	5361372..5361581 (-)	210	WP_003094660.1	hypothetical protein	-
QKA38_RS24990 (QKA38_24990)	-	5361687..5362376 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
QKA38_RS24995 (QKA38_24995)	-	5362373..5362843 (-)	471	WP_023098062.1	hypothetical protein	-
QKA38_RS25000 (QKA38_25000)	-	5362840..5363265 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
QKA38_RS25005 (QKA38_25005)	-	5363398..5364027 (+)	630	WP_023098063.1	DUF1780 domain-containing protein	-
QKA38_RS25010 (QKA38_25010)	-	5364024..5364473 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
QKA38_RS25015 (QKA38_25015)	-	5364499..5364669 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=827594 QKA38_RS24970 WP_023084740.1 5359658..5360530(+) (pilD) [Pseudomonas aeruginosa strain 2021CK-01494]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=827594 QKA38_RS24970 WP_023084740.1 5359658..5360530(+) (pilD) [Pseudomonas aeruginosa strain 2021CK-01494]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472