Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SGW56_RS01840 Genome accession   NZ_CP138663
Coordinates   338259..338861 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain DA70518     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 333259..343861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW56_RS01800 - 333272..333391 (+) 120 WP_000840600.1 hypothetical protein -
  SGW56_RS01805 mreC 333590..334432 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  SGW56_RS01810 mreD 334432..334962 (+) 531 WP_001259927.1 rod shape-determining protein MreD -
  SGW56_RS01815 rplU 335198..335506 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  SGW56_RS01820 - 335512..335832 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SGW56_RS01825 rpmA 335844..336128 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  SGW56_RS01830 obgE 336485..337777 (+) 1293 WP_000496098.1 GTPase ObgE -
  SGW56_RS01835 - 337790..338245 (+) 456 WP_000368902.1 ACT domain-containing protein -
  SGW56_RS01840 ruvA 338259..338861 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  SGW56_RS01845 ruvB 338893..339897 (+) 1005 WP_001005764.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SGW56_RS01850 queA 339899..340924 (+) 1026 WP_111010043.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SGW56_RS01855 tgt 340947..342086 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  SGW56_RS01860 yajC 342105..342365 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=827148 SGW56_RS01840 WP_000271547.1 338259..338861(+) (ruvA) [Staphylococcus aureus strain DA70518]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=827148 SGW56_RS01840 WP_000271547.1 338259..338861(+) (ruvA) [Staphylococcus aureus strain DA70518]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425