Detailed information NTG0827035

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P7I81_RS05805
• Genome accession: NZ_CP124648
• Coordinates: 1223253..1224125 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084852.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 2020CK-00220
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1218253..1229125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I81_RS05790 (P7I81_05790)	-	1219636..1220100 (-)	465	WP_124089607.1	pilin	-
P7I81_RS05795 (P7I81_05795)	pilB	1220331..1222031 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
P7I81_RS05800 (P7I81_05800)	pilC	1222035..1223252 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
P7I81_RS05805 (P7I81_05805)	pilD	1223253..1224125 (+)	873	WP_023084852.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
P7I81_RS05810 (P7I81_05810)	coaE	1224122..1224733 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
P7I81_RS05815 (P7I81_05815)	yacG	1224730..1224930 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
P7I81_RS05820 (P7I81_05820)	-	1224967..1225176 (-)	210	WP_003094660.1	hypothetical protein	-
P7I81_RS05825 (P7I81_05825)	-	1225282..1225971 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
P7I81_RS05830 (P7I81_05830)	-	1225968..1226438 (-)	471	WP_003094664.1	hypothetical protein	-
P7I81_RS05835 (P7I81_05835)	-	1226435..1226860 (-)	426	WP_124089609.1	GNAT family N-acetyltransferase	-
P7I81_RS05840 (P7I81_05840)	-	1226993..1227622 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
P7I81_RS05845 (P7I81_05845)	-	1227619..1228068 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
P7I81_RS05850 (P7I81_05850)	-	1228094..1228264 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31877.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=827035 P7I81_RS05805 WP_023084852.1 1223253..1224125(+) (pilD) [Pseudomonas aeruginosa strain 2020CK-00220]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMFLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=827035 P7I81_RS05805 WP_023084852.1 1223253..1224125(+) (pilD) [Pseudomonas aeruginosa strain 2020CK-00220]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGTTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter baumannii D1279779	50.177	97.586	0.49
pilD	Acinetobacter nosocomialis M2	50.177	97.586	0.49
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469