Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QF117_RS07040 Genome accession   NZ_CP124614
Coordinates   241628..242260 (-) Length   210 a.a.
NCBI ID   WP_017036097.1    Uniprot ID   A0A7Y4ALD5
Organism   Vibrio sp. YMD68     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 236628..247260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS07020 (QF117_07020) - 236769..238004 (+) 1236 WP_282388362.1 aspartate aminotransferase family protein -
  QF117_RS07025 (QF117_07025) astA 238090..239109 (+) 1020 WP_017038796.1 arginine N-succinyltransferase -
  QF117_RS07030 (QF117_07030) astD 239177..240634 (+) 1458 WP_282388363.1 succinylglutamate-semialdehyde dehydrogenase -
  QF117_RS07035 (QF117_07035) - 240675..241466 (+) 792 WP_282388364.1 DUF1338 domain-containing protein -
  QF117_RS07040 (QF117_07040) crp 241628..242260 (-) 633 WP_017036097.1 cAMP-activated global transcriptional regulator CRP Regulator
  QF117_RS07045 (QF117_07045) - 242523..243392 (-) 870 WP_017036096.1 phosphoribulokinase -
  QF117_RS07050 (QF117_07050) - 243521..243733 (-) 213 WP_282388365.1 YheU family protein -
  QF117_RS07055 (QF117_07055) - 243740..244735 (-) 996 WP_282388366.1 hydrolase -
  QF117_RS07060 (QF117_07060) - 244745..245221 (-) 477 WP_282388367.1 TIGR02444 family protein -
  QF117_RS07065 (QF117_07065) - 245221..247140 (-) 1920 WP_282388368.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23639.39 Da        Isoelectric Point: 7.4009

>NTDB_id=826765 QF117_RS07040 WP_017036097.1 241628..242260(-) (crp) [Vibrio sp. YMD68]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=826765 QF117_RS07040 WP_017036097.1 241628..242260(-) (crp) [Vibrio sp. YMD68]
ATGGTTTTAGGTAAACCTCAAACAGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCACGCCGGCGAAAAAGCCGAAACGTTGTACTACATCGTTAAAGGCTCTGTAGCGGTACTGATCAAGG
ATGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGATTTTATTGGCGAGCTAGGCTTGTTTGAAGAAGAT
CAAGAGCGTACTGCATGGGTTCGTGCTAAATCTCCTTGTGAAGTTGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATTCTAATGCGTCTTTCATCACAAATGGCTAACCGTCTACAAGTGACAAGCCAAAAAGTGGGTG
ATTTAGCCTTCCTAGATGTGACTGGCCGTATTGCACAAACGCTGCTTAACCTAGCAAAACAACCTGATGCAATGACTCAC
CCTGACGGCATGCAGATTAAGATCACTCGTCAAGAGATTGGTCAAATCGTTGGCTGTTCTCGTGAGACCGTTGGTCGTAT
CTTAAAGATGCTAGAAGAACAGAACCTAATTTCTGCACACGGTAAAACTATCGTTGTATACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y4ALD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462