Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QI003_RS17205 Genome accession   NZ_CP124601
Coordinates   3415347..3416093 (-) Length   248 a.a.
NCBI ID   WP_282372953.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3410347..3421093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS17180 (QI003_17180) mreC 3410754..3411626 (-) 873 WP_040082268.1 rod shape-determining protein MreC -
  QI003_RS17185 (QI003_17185) mreB 3411657..3412670 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  QI003_RS17190 (QI003_17190) radC 3412762..3413457 (-) 696 WP_014664850.1 DNA repair protein RadC -
  QI003_RS17195 (QI003_17195) - 3413494..3414063 (-) 570 WP_040082267.1 Maf family nucleotide pyrophosphatase -
  QI003_RS17200 (QI003_17200) - 3414215..3415213 (-) 999 WP_282372952.1 SPOR domain-containing protein -
  QI003_RS17205 (QI003_17205) comC 3415347..3416093 (-) 747 WP_282372953.1 A24 family peptidase Machinery gene
  QI003_RS17210 (QI003_17210) - 3416233..3417525 (-) 1293 WP_136654297.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QI003_RS17215 (QI003_17215) valS 3417585..3420227 (-) 2643 WP_282372955.1 valine--tRNA ligase -
  QI003_RS17220 (QI003_17220) - 3420675..3420866 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26560.17 Da        Isoelectric Point: 10.0061

>NTDB_id=826641 QI003_RS17205 WP_282372953.1 3415347..3416093(-) (comC) [Bacillus stercoris strain BS21]
MLFILFIFGLILGSFYYTAGRRIPLHLSIIAPRSSCSFCRRALTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELLTA
CLFAAAGIRFGMSLELLTAVVFLSLLIIVAVTDLHYMLIPNRILIFFLPFLVAARLISPLDSWYAGLLGAAAGFLFLALI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGSAAVLTGRLAKKQPLPFAPAIAAGSILTYLYGDSIIS
FYIKMASG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=826641 QI003_RS17205 WP_282372953.1 3415347..3416093(-) (comC) [Bacillus stercoris strain BS21]
ATGCTATTCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGCGCCGTATCCCCTTACATCT
ATCTATTATCGCGCCCCGTTCATCATGCTCGTTTTGCCGGCGGGCTTTGACCCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCGGCTGAGCTTTTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATGTCGCTGGAATTGTTAACCGCTGTCGTGTTTCTCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTATATGCTGATTCCAAATCGAATATTGATTTTTTTCCTTCCCTTTTTGGTCGCTG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCTGCAGCCGGATTTCTATTTCTGGCTTTAATT
GCCGCAATCACTCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCGGCTGCCTTTTTCTTTTCTGTTTTAATAGGCGCATTGTACGGGTCGGCAGCTGTTCTGACTGGTAGACTCGCCA
AAAAGCAGCCGCTTCCCTTTGCCCCCGCAATAGCGGCAGGGAGTATTTTAACCTATTTATACGGGGACTCTATCATTTCG
TTTTATATCAAAATGGCATCGGGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

93.145

100

0.931