Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QI003_RS19205 Genome accession   NZ_CP124601
Coordinates   3806690..3807334 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3801690..3812334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS19170 (QI003_19170) - 3802883..3803314 (+) 432 WP_014665185.1 Na(+)/H(+) antiporter subunit B -
  QI003_RS19175 (QI003_19175) - 3803314..3803655 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QI003_RS19180 (QI003_19180) - 3803648..3805129 (+) 1482 WP_136653690.1 Na+/H+ antiporter subunit D -
  QI003_RS19185 (QI003_19185) - 3805135..3805611 (+) 477 WP_014665187.1 Na+/H+ antiporter subunit E -
  QI003_RS19190 (QI003_19190) - 3805611..3805895 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QI003_RS19195 (QI003_19195) mnhG 3805879..3806253 (+) 375 WP_014665188.1 monovalent cation/H(+) antiporter subunit G -
  QI003_RS19200 (QI003_19200) - 3806292..3806672 (-) 381 WP_040081970.1 hotdog fold thioesterase -
  QI003_RS19205 (QI003_19205) comA 3806690..3807334 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QI003_RS19210 (QI003_19210) comP 3807415..3809712 (-) 2298 WP_134975177.1 histidine kinase Regulator
  QI003_RS19215 (QI003_19215) comX 3809720..3809881 (-) 162 WP_003241045.1 competence pheromone ComX -
  QI003_RS19220 (QI003_19220) - 3809896..3810756 (-) 861 WP_071580795.1 polyprenyl synthetase family protein -
  QI003_RS19225 (QI003_19225) degQ 3810941..3811081 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QI003_RS19230 (QI003_19230) - 3811303..3811428 (+) 126 WP_128422565.1 hypothetical protein -
  QI003_RS19235 (QI003_19235) - 3811543..3811911 (+) 369 WP_014665193.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=826646 QI003_RS19205 WP_003220716.1 3806690..3807334(-) (comA) [Bacillus stercoris strain BS21]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=826646 QI003_RS19205 WP_003220716.1 3806690..3807334(-) (comA) [Bacillus stercoris strain BS21]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTGCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCACTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1