Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QA540_RS06370 Genome accession   NZ_CP124585
Coordinates   1228103..1228426 (-) Length   107 a.a.
NCBI ID   WP_283722000.1    Uniprot ID   -
Organism   Macrococcus psychrotolerans strain NRL/St 13/116     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1223103..1233426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA540_RS06340 (QA540_06335) gcvPA 1223813..1225156 (-) 1344 WP_219491932.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QA540_RS06345 (QA540_06340) gcvT 1225169..1226254 (-) 1086 WP_219494831.1 glycine cleavage system aminomethyltransferase GcvT -
  QA540_RS06350 (QA540_06345) - 1226392..1226898 (-) 507 WP_219491935.1 shikimate kinase -
  QA540_RS06355 (QA540_06350) comGF 1227059..1227511 (-) 453 WP_420496036.1 competence type IV pilus minor pilin ComGF -
  QA540_RS06360 (QA540_06355) - 1227456..1227698 (-) 243 WP_419894979.1 hypothetical protein -
  QA540_RS06365 (QA540_06360) comGD 1227685..1228110 (-) 426 WP_101037039.1 competence type IV pilus minor pilin ComGD -
  QA540_RS06370 (QA540_06365) comGC 1228103..1228426 (-) 324 WP_283722000.1 competence type IV pilus major pilin ComGC Machinery gene
  QA540_RS06375 (QA540_06370) comGB 1228448..1229521 (-) 1074 WP_420496037.1 competence type IV pilus assembly protein ComGB -
  QA540_RS06380 (QA540_06375) comGA 1229472..1230443 (-) 972 WP_219492120.1 competence type IV pilus ATPase ComGA Machinery gene
  QA540_RS06385 (QA540_06380) - 1230655..1230903 (+) 249 WP_041636023.1 DUF2626 domain-containing protein -
  QA540_RS06390 (QA540_06385) - 1230931..1231551 (-) 621 WP_420496038.1 MBL fold metallo-hydrolase -
  QA540_RS06395 (QA540_06390) - 1231641..1231880 (+) 240 WP_219492126.1 DUF2759 domain-containing protein -
  QA540_RS06400 (QA540_06395) - 1231907..1232218 (-) 312 WP_420496039.1 MTH1187 family thiamine-binding protein -
  QA540_RS06405 (QA540_06400) - 1232218..1233186 (-) 969 WP_420496040.1 ROK family glucokinase -
  QA540_RS06410 (QA540_06405) - 1233183..1233374 (-) 192 WP_133445012.1 YqgQ family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11716.82 Da        Isoelectric Point: 8.4919

>NTDB_id=826494 QA540_RS06370 WP_283722000.1 1228103..1228426(-) (comGC) [Macrococcus psychrotolerans strain NRL/St 13/116]
MASRLKKQFSKNEGFTLIEMLLVLLVISILIIVIIPNIAKQSKTVQAKGCEAQVKMVQGQIEAYRIDTGKTPSTINELVP
EYLKENQVKCKDGADIIINNGEASLGA

Nucleotide


Download         Length: 324 bp        

>NTDB_id=826494 QA540_RS06370 WP_283722000.1 1228103..1228426(-) (comGC) [Macrococcus psychrotolerans strain NRL/St 13/116]
ATAGCGAGCAGATTAAAAAAACAATTTAGTAAGAATGAAGGATTTACTTTAATTGAAATGTTATTAGTATTACTCGTAAT
TTCGATTTTAATCATCGTTATCATTCCGAATATCGCTAAACAATCTAAGACAGTACAGGCTAAAGGATGTGAAGCTCAAG
TAAAGATGGTACAAGGTCAGATTGAGGCATATCGAATTGATACGGGTAAAACACCATCTACAATAAATGAGCTTGTTCCT
GAATATTTAAAAGAAAATCAAGTGAAATGTAAAGATGGAGCAGACATAATAATCAATAATGGTGAGGCATCATTAGGTGC
TTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

57.447

87.85

0.505
  comGC Staphylococcus aureus N315

57.447

87.85

0.505
  comGC Bacillus subtilis subsp. subtilis str. 168

46.667

84.112

0.393