Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   bsdcttw_RS10345 Genome accession   NZ_AP023368
Coordinates   2381727..2383484 (+) Length   585 a.a.
NCBI ID   WP_185259293.1    Uniprot ID   A0A7I8DMS1
Organism   Anaerocolumna chitinilytica strain CTTW     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2376727..2388484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  bsdcttw_RS10325 (bsdcttw_20440) - 2377853..2378029 (+) 177 WP_185259289.1 DUF4177 domain-containing protein -
  bsdcttw_RS10330 (bsdcttw_20450) - 2378197..2379843 (+) 1647 WP_185259290.1 glycosyl hydrolase family 18 protein -
  bsdcttw_RS10335 (bsdcttw_20460) - 2380112..2381059 (+) 948 WP_185259291.1 glycoside hydrolase family 43 protein -
  bsdcttw_RS10340 (bsdcttw_20470) - 2381161..2381619 (+) 459 WP_185259292.1 MarR family winged helix-turn-helix transcriptional regulator -
  bsdcttw_RS10345 (bsdcttw_20480) rcrP 2381727..2383484 (+) 1758 WP_185259293.1 ABC transporter ATP-binding protein Regulator
  bsdcttw_RS10350 (bsdcttw_20490) rcrQ 2383553..2385394 (+) 1842 WP_197979862.1 ABC transporter ATP-binding protein Regulator
  bsdcttw_RS10355 (bsdcttw_20500) - 2385644..2386423 (+) 780 WP_185259294.1 zinc ribbon domain-containing protein -
  bsdcttw_RS10360 (bsdcttw_20510) - 2386476..2387369 (+) 894 WP_185259295.1 GNAT family N-acetyltransferase -
  bsdcttw_RS25335 (bsdcttw_20530) - 2387733..2388365 (+) 633 WP_185259296.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64806.78 Da        Isoelectric Point: 7.7539

>NTDB_id=82634 bsdcttw_RS10345 WP_185259293.1 2381727..2383484(+) (rcrP) [Anaerocolumna chitinilytica strain CTTW]
MLRIFKYLKLKEWLQAAISLIFIITQVWLDLKLPDYMAGITKLVQMPGSKMSDIWEQGIYMLLCAFGSVISAIIVGFFAA
RIAASFSQRLRSMLFSKVDSFSMEEINRFSTSSLITRSTNDITQIQMLVTMGLQMIIKAPIMAVWAITKIAGKGFEWSLA
TGAAVLVLVVMIAFIMVFVIPKFKKMQMLTDNLNQVTRENLTGLRVVRAYNAENYQEEKFEKANDELTGTQLYTSRGMAV
MMPVMSMIMSGISLAIYWIGAYLIDGAQAMDKLTIFSNMVVFSSYAVQVIMSFMMLIMLFILMPRATVSARRINEVLDTQ
PTILDGLLTEGNLSLTGEVEFKNVSFRYPGAAEYVLQDVSFSVKKGETIAFIGSTGSGKSTLINLVPRFFDATEGEVLID
GINVKDYKGEALYNKIGYVPQKAVLFRGRVSSNVAYGENGKEPATIEQIKQAVSIAQGSDFVEAMDGGYNADISQGGKNV
SGGQKQRLAIARAVSRKPEIYIFDDSFSALDYKTDRVLRSALKKETSGVTSMIIAQRIGTIIDADKIIVLDEGRVVGEGT
HKELLTTCQVYKEIAMSQLSEEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=82634 bsdcttw_RS10345 WP_185259293.1 2381727..2383484(+) (rcrP) [Anaerocolumna chitinilytica strain CTTW]
ATGCTTAGAATATTTAAGTATTTAAAATTAAAAGAATGGCTGCAGGCTGCCATCAGTCTTATATTCATTATTACACAGGT
CTGGCTTGACCTTAAGCTGCCGGATTATATGGCAGGAATTACGAAACTGGTACAGATGCCCGGCAGTAAGATGAGTGATA
TTTGGGAGCAAGGTATTTATATGCTTCTATGTGCTTTTGGAAGTGTTATTTCTGCAATCATTGTAGGTTTTTTTGCTGCT
CGGATAGCAGCCTCCTTTTCACAGAGACTTCGCAGTATGCTGTTTTCCAAAGTGGATTCCTTTTCCATGGAGGAAATCAA
CCGTTTTTCTACTTCAAGTCTGATAACACGTTCTACAAATGATATTACACAGATACAAATGCTTGTTACTATGGGTCTGC
AAATGATAATAAAAGCACCAATTATGGCTGTTTGGGCTATTACCAAAATTGCAGGCAAGGGTTTCGAATGGTCACTGGCT
ACAGGAGCGGCAGTATTGGTTCTGGTTGTTATGATTGCGTTTATCATGGTTTTTGTTATCCCTAAGTTTAAAAAAATGCA
GATGCTTACAGATAACCTGAATCAGGTCACCAGGGAGAATCTGACAGGGCTTCGTGTGGTTCGTGCATACAATGCTGAAA
ATTATCAGGAAGAGAAGTTTGAGAAGGCGAATGATGAATTAACCGGAACACAGCTTTATACTAGTCGTGGAATGGCAGTT
ATGATGCCGGTAATGAGTATGATTATGAGCGGTATATCCCTTGCCATTTACTGGATTGGAGCTTATTTAATCGACGGTGC
ACAGGCAATGGATAAGCTGACAATATTCTCAAATATGGTGGTATTCTCTTCCTATGCCGTACAGGTAATTATGTCCTTCA
TGATGTTGATCATGCTCTTTATCCTTATGCCTAGAGCTACTGTATCGGCCAGACGTATTAATGAGGTGTTAGATACTCAG
CCGACTATCTTAGATGGCCTTCTGACGGAAGGGAACCTAAGTCTTACCGGTGAAGTGGAATTTAAAAATGTAAGCTTTCG
TTATCCCGGCGCAGCAGAATATGTACTGCAGGATGTCAGCTTTTCCGTAAAAAAAGGTGAGACCATCGCATTTATTGGTT
CTACAGGCAGCGGTAAAAGTACATTGATAAATCTGGTTCCCCGTTTCTTTGATGCCACGGAAGGGGAGGTGCTGATTGAC
GGGATCAATGTGAAAGATTATAAAGGTGAAGCTTTGTATAATAAAATAGGCTATGTTCCGCAAAAAGCAGTGTTATTCCG
CGGCAGAGTAAGCTCAAATGTGGCATATGGGGAGAATGGTAAAGAACCTGCTACGATAGAGCAGATTAAACAGGCTGTAT
CAATAGCACAGGGATCTGACTTTGTAGAAGCAATGGATGGCGGATATAATGCAGACATTTCACAAGGCGGCAAGAATGTT
TCAGGCGGTCAGAAACAAAGGCTTGCTATTGCCCGTGCAGTAAGCCGAAAACCGGAAATCTATATTTTTGATGACAGCTT
TTCAGCCTTGGATTACAAAACGGACCGTGTGCTAAGGAGTGCTTTGAAAAAAGAAACCTCCGGAGTTACCAGTATGATCA
TAGCACAGCGAATCGGGACAATTATAGATGCAGATAAGATTATTGTTTTGGACGAAGGCAGGGTTGTTGGTGAGGGTACC
CATAAAGAACTACTGACAACCTGTCAGGTATATAAGGAAATTGCAATGTCACAGCTTAGTGAGGAGGAACTGGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(19-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8DMS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.936

100

0.55

Multiple sequence alignment