Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   bsdcttw_RS10350 Genome accession   NZ_AP023368
Coordinates   2383553..2385394 (+) Length   613 a.a.
NCBI ID   WP_197979862.1    Uniprot ID   -
Organism   Anaerocolumna chitinilytica strain CTTW     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2378553..2390394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  bsdcttw_RS10335 (bsdcttw_20460) - 2380112..2381059 (+) 948 WP_185259291.1 glycoside hydrolase family 43 protein -
  bsdcttw_RS10340 (bsdcttw_20470) - 2381161..2381619 (+) 459 WP_185259292.1 MarR family winged helix-turn-helix transcriptional regulator -
  bsdcttw_RS10345 (bsdcttw_20480) rcrP 2381727..2383484 (+) 1758 WP_185259293.1 ABC transporter ATP-binding protein Regulator
  bsdcttw_RS10350 (bsdcttw_20490) rcrQ 2383553..2385394 (+) 1842 WP_197979862.1 ABC transporter ATP-binding protein Regulator
  bsdcttw_RS10355 (bsdcttw_20500) - 2385644..2386423 (+) 780 WP_185259294.1 zinc ribbon domain-containing protein -
  bsdcttw_RS10360 (bsdcttw_20510) - 2386476..2387369 (+) 894 WP_185259295.1 GNAT family N-acetyltransferase -
  bsdcttw_RS25335 (bsdcttw_20530) - 2387733..2388365 (+) 633 WP_185259296.1 CatB-related O-acetyltransferase -
  bsdcttw_RS10370 (bsdcttw_20540) - 2388579..2390390 (+) 1812 WP_225903833.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67355.10 Da        Isoelectric Point: 6.5092

>NTDB_id=82635 bsdcttw_RS10350 WP_197979862.1 2383553..2385394(+) (rcrQ) [Anaerocolumna chitinilytica strain CTTW]
MNNKGTMNGPGGMGGMGGAVEKSQDFKGTWIKLIQYCKEYLPVIIFALVAAAIGTVLQIIGPDRLKDMTNEIAKGLPALI
NGKAVIGVINMDRVVRIASLLVCFYAGSALLNFTQSYIMATVTQKISKTMRTDISQKINRLPLRYFDSTSYGDVLSRVTN
DVDAIGQTMNQSIGTLVTSITMFVGSLIMMFYTNWILALTAVLASVIGFALMMIIMAKSQKYFTAQQEGLGSVNGHIEEI
YSGHNIVKVYNGGKEAKKTFEEINDKLYDSAWKSQFLSGLMMPLMQFIGNFGYVAVCVVGAVLAMNGNISFGVIVAFMMY
IRLFTQPLSQMAQAANNLQRTAAAGERVFEFLEETELEDESQKVKGLQNIKGDVEFKHVRFGYVPEKIIIHDFSAKVKPG
QKVAIVGPTGAGKTTIVNLLMRFYDLDGGEILLDGTPISQVPRENVHEQFGMVLQDSWLFEGTIKENIVYSKQGITDEQV
VKACKTVGLHHFIKTMPDGYDTVLNDKASLSEGQKQLITIARAMIQNAPLLILDEATSSVDTRTERIVQSAMDQLTAGRT
SFVIAHRLSTIKNADLILVMKDGDIIESGSHDELLAHSGFYAELYNSQFEVAV

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=82635 bsdcttw_RS10350 WP_197979862.1 2383553..2385394(+) (rcrQ) [Anaerocolumna chitinilytica strain CTTW]
ATGAATAATAAAGGAACAATGAATGGTCCCGGAGGAATGGGAGGAATGGGAGGAGCAGTTGAGAAGTCCCAGGATTTTAA
AGGTACATGGATTAAGCTGATTCAATATTGTAAAGAATATCTTCCTGTTATTATCTTTGCATTAGTGGCAGCAGCTATCG
GTACAGTGCTGCAGATTATTGGTCCTGATAGATTAAAAGATATGACCAATGAGATTGCAAAAGGGTTACCGGCCTTAATA
AATGGGAAAGCGGTGATAGGGGTAATTAATATGGACAGGGTAGTCCGTATTGCATCCTTGCTCGTATGTTTTTATGCCGG
CTCTGCCCTGTTGAATTTTACACAAAGTTATATAATGGCTACGGTTACGCAGAAAATATCCAAAACCATGCGCACCGATA
TTTCACAAAAAATTAACCGGCTGCCCCTTCGATATTTTGACAGTACCAGCTATGGCGATGTGCTAAGCCGGGTTACCAAT
GATGTAGATGCTATTGGACAGACTATGAATCAAAGTATTGGTACACTGGTTACCTCCATTACCATGTTTGTCGGTTCATT
AATTATGATGTTTTATACAAATTGGATTCTGGCGCTGACTGCAGTACTTGCAAGTGTAATCGGTTTTGCCTTAATGATGA
TTATTATGGCAAAATCCCAGAAATATTTTACCGCACAGCAGGAAGGACTTGGCAGTGTTAATGGGCATATTGAAGAGATT
TATTCCGGTCATAATATCGTTAAGGTATATAACGGTGGAAAAGAAGCAAAAAAGACCTTTGAAGAGATTAATGACAAGTT
ATATGACAGTGCGTGGAAATCACAGTTCTTATCCGGCTTGATGATGCCGTTAATGCAGTTCATCGGAAATTTCGGTTATG
TAGCTGTTTGTGTTGTCGGTGCGGTATTGGCTATGAATGGGAATATTTCTTTTGGTGTAATTGTTGCATTTATGATGTAT
ATCCGTTTGTTTACACAGCCGCTGTCTCAGATGGCACAGGCCGCAAATAATTTACAAAGGACAGCTGCTGCCGGAGAACG
TGTTTTTGAGTTCTTAGAAGAAACCGAACTGGAAGACGAGAGCCAGAAGGTGAAGGGATTACAGAATATAAAGGGTGATG
TGGAATTTAAGCATGTCAGATTCGGATATGTACCTGAAAAAATTATTATTCATGATTTCTCTGCAAAAGTAAAACCGGGA
CAGAAGGTTGCAATAGTTGGTCCTACTGGTGCAGGTAAGACTACGATTGTAAATTTACTCATGAGATTTTATGATTTGGA
TGGTGGTGAGATTCTATTGGATGGAACACCTATCAGTCAGGTACCCAGGGAGAATGTCCATGAACAATTTGGTATGGTAT
TACAGGACTCCTGGCTTTTTGAAGGCACAATAAAAGAGAATATTGTTTACAGTAAACAGGGAATTACAGATGAACAGGTG
GTTAAGGCCTGCAAGACTGTAGGATTGCACCATTTTATCAAAACCATGCCGGATGGATATGATACAGTCCTAAATGATAA
AGCCAGTCTGTCGGAAGGACAAAAGCAGCTGATTACCATTGCCCGTGCCATGATACAGAATGCACCTCTTCTTATACTGG
ATGAAGCAACCAGTTCTGTGGATACCCGTACGGAACGCATTGTACAATCTGCAATGGACCAGTTAACGGCTGGCAGAACT
TCCTTTGTTATTGCACACAGGCTTTCTACCATTAAAAATGCAGACTTGATACTTGTGATGAAAGATGGAGATATTATTGA
GAGCGGCAGTCACGACGAACTGCTTGCACACAGCGGGTTCTATGCAGAACTTTATAATAGCCAGTTTGAAGTAGCTGTAT
AA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-538)

ABC transporter transmembrane region (ABC_membrane)

(45-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.993

95.922

0.556

Multiple sequence alignment