Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QJV49_RS00265 Genome accession   NZ_CP124538
Coordinates   42519..43841 (-) Length   440 a.a.
NCBI ID   WP_225511284.1    Uniprot ID   A0AA49EW90
Organism   Lactococcus sp. NH2-7C     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 37519..48841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS00235 (QJV49_00235) - 38661..39629 (+) 969 WP_225511280.1 PhoH family protein -
  QJV49_RS00240 (QJV49_00240) - 39687..40166 (+) 480 WP_225511281.1 NUDIX hydrolase -
  QJV49_RS00245 (QJV49_00245) ybeY 40319..40807 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  QJV49_RS00250 (QJV49_00250) - 40791..41246 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  QJV49_RS00255 (QJV49_00255) - 41260..41838 (+) 579 WP_225511282.1 nucleotidyltransferase family protein -
  QJV49_RS13215 - 41872..42522 (-) 651 WP_370632034.1 ComF family protein -
  QJV49_RS00265 (QJV49_00265) comFA 42519..43841 (-) 1323 WP_225511284.1 DEAD/DEAH box helicase Machinery gene
  QJV49_RS00270 (QJV49_00270) - 43898..44527 (+) 630 WP_225511285.1 YigZ family protein -
  QJV49_RS00275 (QJV49_00275) - 44662..45159 (+) 498 WP_225511286.1 VanZ family protein -
  QJV49_RS00280 (QJV49_00280) - 45207..46226 (+) 1020 WP_225511287.1 DUF475 domain-containing protein -
  QJV49_RS00285 (QJV49_00285) - 46341..47087 (+) 747 WP_225511288.1 bifunctional metallophosphatase/5'-nucleotidase -
  QJV49_RS00290 (QJV49_00290) glyQ 47372..48325 (+) 954 WP_003130667.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 50324.89 Da        Isoelectric Point: 10.2111

>NTDB_id=826306 QJV49_RS00265 WP_225511284.1 42519..43841(-) (comFA) [Lactococcus sp. NH2-7C]
MSTNQEKLFGRLLLKNDILQLIKSTDKISVSKIFSNFLIEAKVNSILGMTSITSNKIKCNRCGTVHIKNSVKLPIDAFYC
PSCIQLGRVRSDEFLYFLPQKNFPKRSYINWSGKLTENQKSISSALCQKINSHRQIIVQAVTGAGKTEIIYQVIEQILEN
GGIVGLASPRIDVCLELHQRLSRDFSCKIPLLYHDGDSYFRAPLIIMTSHQLLRFREAFDLLIIDEVDAFPFKDNEMLYF
AAEKARKMEGNLIYLTATSTDKLEKDIKNQKLYPLFLPRRFHNFPLVMPKFFWKNKFDKKLIEQRNSGFPLLIFAAEIES
GQEFAKQLQLKFPKEKIAFVASTTNNRLEIVKAFRKKEITILIATSILERGVTFPNVDVFVINSEHPNFTKSALIQMAGR
VGRSPERPIGLVSFFHYGKSKAMCQAVREIKKMNQLGGFS

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=826306 QJV49_RS00265 WP_225511284.1 42519..43841(-) (comFA) [Lactococcus sp. NH2-7C]
ATGAGCACTAATCAAGAAAAGTTATTTGGTCGTTTATTATTAAAAAATGATATTTTACAACTTATAAAAAGTACTGACAA
GATTTCTGTCAGTAAAATTTTTAGCAATTTTTTGATAGAAGCGAAGGTGAATTCAATTTTGGGGATGACTTCAATTACTT
CCAATAAAATAAAATGCAATCGCTGTGGGACTGTTCATATAAAAAATTCTGTCAAACTTCCAATTGATGCGTTTTACTGT
CCAAGCTGTATTCAGTTGGGTCGAGTCCGTTCCGATGAATTCTTGTACTTTCTGCCCCAAAAGAATTTTCCAAAGAGATC
ATATATAAACTGGTCTGGAAAACTGACAGAGAACCAAAAATCAATTTCAAGCGCCCTCTGTCAGAAAATTAATTCTCATC
GGCAAATAATTGTCCAAGCTGTGACTGGAGCTGGAAAAACTGAAATAATTTATCAAGTTATTGAGCAAATTTTAGAAAAT
GGTGGAATTGTTGGTCTAGCTAGTCCAAGAATTGATGTTTGCCTTGAACTTCATCAGCGATTATCACGTGATTTTTCCTG
TAAGATTCCACTACTATATCATGATGGAGATAGCTATTTCAGAGCTCCATTAATAATAATGACCAGTCATCAGCTTTTAC
GCTTCAGGGAAGCTTTTGATTTACTGATTATTGATGAGGTAGATGCATTTCCCTTTAAAGATAATGAAATGCTTTATTTT
GCGGCAGAAAAAGCAAGAAAAATGGAAGGAAATTTAATATATTTAACCGCAACTTCTACTGACAAACTTGAAAAAGATAT
AAAGAACCAAAAACTTTATCCTTTGTTTCTCCCGCGTCGTTTTCACAATTTTCCTTTAGTGATGCCTAAATTTTTTTGGA
AAAATAAATTTGATAAGAAATTAATTGAGCAAAGAAATAGTGGCTTTCCACTTCTAATTTTTGCTGCTGAAATTGAATCT
GGACAAGAATTTGCAAAACAACTACAACTAAAATTTCCTAAAGAAAAAATTGCTTTCGTTGCCTCAACAACAAATAACAG
ATTGGAAATTGTCAAAGCCTTTAGAAAGAAGGAAATCACTATTTTAATAGCGACTTCAATTCTTGAACGTGGGGTAACTT
TTCCAAATGTTGATGTTTTTGTCATCAATAGTGAGCACCCAAACTTCACTAAATCTGCACTAATACAAATGGCTGGACGT
GTTGGTCGTAGTCCTGAGCGTCCAATAGGCTTGGTTAGTTTTTTTCATTACGGAAAATCAAAAGCAATGTGTCAGGCAGT
TAGAGAAATCAAAAAAATGAATCAACTTGGAGGTTTTTCATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(114-258)

Helicase conserved C-terminal domain (Helicase_C)

(300-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

72.75

90.909

0.661
  comFA/cflA Streptococcus pneumoniae Rx1

52.01

90.455

0.47
  comFA/cflA Streptococcus pneumoniae D39

52.01

90.455

0.47
  comFA/cflA Streptococcus pneumoniae R6

52.01

90.455

0.47
  comFA/cflA Streptococcus pneumoniae TIGR4

52.01

90.455

0.47
  comFA/cflA Streptococcus mitis SK321

51.508

90.455

0.466
  comFA/cflA Streptococcus mitis NCTC 12261

51.005

90.455

0.461
  comFA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373