Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QJS82_RS11885 Genome accession   NZ_CP124526
Coordinates   2786902..2787801 (+) Length   299 a.a.
NCBI ID   WP_281490624.1    Uniprot ID   -
Organism   Psychrobacter sp. WB2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2781902..2792801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS82_RS11870 (QJS82_11870) tpiA 2782379..2783179 (-) 801 WP_281490622.1 triose-phosphate isomerase -
  QJS82_RS11875 (QJS82_11875) pilB 2783714..2785423 (+) 1710 WP_281490623.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QJS82_RS11880 (QJS82_11880) - 2785653..2786876 (+) 1224 Protein_2324 type II secretion system F family protein -
  QJS82_RS11885 (QJS82_11885) pilD 2786902..2787801 (+) 900 WP_281490624.1 A24 family peptidase Machinery gene
  QJS82_RS11890 (QJS82_11890) coaE 2787919..2788608 (+) 690 WP_201620042.1 dephospho-CoA kinase -
  QJS82_RS11895 (QJS82_11895) rlmB 2788571..2789341 (-) 771 WP_183619390.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QJS82_RS11900 (QJS82_11900) - 2789616..2789951 (-) 336 WP_068407914.1 pyrimidine/purine nucleoside phosphorylase -
  QJS82_RS11905 (QJS82_11905) recN 2790509..2792188 (+) 1680 WP_281490625.1 DNA repair protein RecN -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32801.29 Da        Isoelectric Point: 7.9638

>NTDB_id=826223 QJS82_RS11885 WP_281490624.1 2786902..2787801(+) (pilD) [Psychrobacter sp. WB2]
MQFIQLLQENMTLALVVFGLLGLCVGSFLNVVIHRIPLMMVAAWRQECSQFMAEQADMPREHTQPLADIVATDTPITLST
PASRCPHCAHKIKWYENIPLISWLALRGRCSECKAPIGLRYPIVELASALLSILVIYQFGVSAAGLSALILVWTLVALTG
IDFDTQLLPDRLTFPLAGLGLAVNSQGWFVAPTQSIWGLLLGFLSLWVVVKVFYLITKKHGMGQGDFKLLAVLGAWLGPM
MLPLIILLSSLLGSIVGLILMKKQGESRPFAFGPYIAIAGIIALLYGSDIVNWYLGMYT

Nucleotide


Download         Length: 900 bp        

>NTDB_id=826223 QJS82_RS11885 WP_281490624.1 2786902..2787801(+) (pilD) [Psychrobacter sp. WB2]
ATGCAATTTATACAATTATTACAAGAAAATATGACTCTTGCTTTAGTCGTATTTGGCCTACTCGGTCTTTGTGTCGGCAG
TTTTTTAAATGTCGTCATTCATCGTATACCGCTAATGATGGTAGCGGCTTGGCGACAAGAGTGTAGCCAGTTTATGGCTG
AGCAAGCGGACATGCCGCGTGAACATACGCAGCCATTAGCAGATATCGTTGCCACCGATACCCCTATCACATTAAGCACA
CCTGCTTCACGCTGTCCTCATTGCGCCCATAAAATAAAATGGTATGAGAATATCCCTTTAATAAGTTGGCTTGCATTACG
TGGACGCTGCTCGGAGTGTAAAGCCCCTATTGGGCTGCGTTATCCTATTGTTGAGTTGGCGTCCGCCCTACTATCTATCT
TGGTCATTTACCAGTTTGGCGTCAGCGCCGCTGGATTATCTGCCCTGATTTTGGTCTGGACGCTGGTAGCATTGACCGGT
ATTGACTTTGATACGCAGCTACTGCCTGACCGCTTGACTTTTCCATTAGCAGGATTAGGCTTGGCGGTAAACTCTCAAGG
CTGGTTTGTAGCCCCTACTCAGTCCATTTGGGGGCTATTGCTTGGGTTTCTATCTTTGTGGGTTGTGGTCAAAGTCTTTT
ATCTCATCACTAAAAAACATGGCATGGGACAAGGTGACTTTAAATTATTGGCGGTGTTGGGTGCTTGGCTTGGCCCTATG
ATGTTGCCGTTAATTATTTTACTGTCGTCACTGCTTGGTTCAATCGTTGGGCTTATTCTAATGAAAAAACAAGGGGAAAG
TCGTCCTTTTGCCTTTGGTCCTTATATCGCGATTGCCGGTATCATCGCTTTACTATACGGCTCAGACATCGTCAATTGGT
ATCTAGGGATGTATACTTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(149-258)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

53.819

96.321

0.518
  pilD Acinetobacter baumannii D1279779

53.125

96.321

0.512
  pilD Vibrio campbellii strain DS40M4

45.455

99.331

0.452
  pilD Vibrio cholerae strain A1552

48.387

93.311

0.452
  pilD Neisseria gonorrhoeae MS11

42.143

93.645

0.395