Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QJS82_RS08310 Genome accession   NZ_CP124526
Coordinates   1990803..1991603 (+) Length   266 a.a.
NCBI ID   WP_281490167.1    Uniprot ID   -
Organism   Psychrobacter sp. WB2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1991982..1992344 1990803..1991603 flank 379


Gene organization within MGE regions


Location: 1990803..1992344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS82_RS08310 (QJS82_08310) pilR 1990803..1991603 (+) 801 WP_281490167.1 sigma-54 dependent transcriptional regulator Regulator
  QJS82_RS08315 (QJS82_08315) - 1991596..1992344 (-) 749 Protein_1636 IS5 family transposase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29315.56 Da        Isoelectric Point: 6.9753

>NTDB_id=826218 QJS82_RS08310 WP_281490167.1 1990803..1991603(+) (pilR) [Psychrobacter sp. WB2]
MSKSTPERSPEQQMLDSRLIGDSAVMHPLKNTILKFARSQAPVFLSGASGTGKEVVARLIHDLSPRRDGSFVPVNCGTIP
SELMESEFFGHKKGSFTGAVADKQGLFQQANGGTLFLDEVADLPLAIQVKLLRAIQEKTVRAIGDTKEVPVDIRILSATH
KDLNQLVQAGNFRQDLYYRINVIELKLPTLNARRDDIPVLAKHFLVLIADEWQLESPPTLTDAACARLQHHDFAGNVREL
RNVLERAVTLAETSTIDASHLGHVIN

Nucleotide


Download         Length: 801 bp        

>NTDB_id=826218 QJS82_RS08310 WP_281490167.1 1990803..1991603(+) (pilR) [Psychrobacter sp. WB2]
GTGTCCAAGTCAACGCCTGAGCGTTCACCTGAGCAGCAAATGCTCGATAGCCGTTTGATTGGCGACTCTGCTGTCATGCA
TCCGCTAAAAAACACCATTTTAAAATTTGCACGCTCACAAGCGCCGGTTTTTTTATCAGGGGCTTCAGGTACAGGAAAAG
AAGTGGTGGCGCGCTTGATTCATGACTTAAGCCCGCGCCGCGATGGCAGCTTTGTGCCGGTCAACTGCGGGACAATACCG
TCAGAGCTGATGGAGTCGGAGTTTTTTGGTCATAAAAAAGGCAGCTTTACCGGCGCTGTTGCCGATAAACAAGGACTGTT
TCAACAAGCCAATGGCGGCACCTTATTTTTAGATGAGGTCGCCGACTTGCCACTAGCGATACAAGTTAAATTACTACGGG
CTATTCAAGAGAAAACCGTGCGCGCAATCGGTGATACCAAAGAAGTACCGGTCGATATTCGTATTTTATCGGCGACCCAT
AAGGATTTAAATCAGCTGGTACAAGCGGGCAATTTTCGCCAAGATTTGTATTATCGTATTAATGTGATTGAGCTTAAACT
GCCAACGCTCAACGCGCGGCGTGATGATATCCCTGTATTGGCTAAGCACTTTTTGGTACTCATCGCCGATGAATGGCAAT
TAGAATCGCCGCCAACACTGACTGACGCTGCTTGCGCGCGCCTGCAACATCATGACTTTGCTGGTAACGTTCGTGAGTTG
CGTAACGTCCTTGAGCGCGCGGTAACCTTGGCAGAAACGTCGACTATCGATGCCAGTCATCTAGGGCATGTCATCAATTA
A

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(19-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.281

96.241

0.609
  pilR Acinetobacter baumannii strain A118

57.48

95.489

0.549
  luxO Vibrio cholerae strain A1552

44.958

89.474

0.402