Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QJS82_RS01715 Genome accession   NZ_CP124526
Coordinates   390545..391243 (+) Length   232 a.a.
NCBI ID   WP_281491020.1    Uniprot ID   -
Organism   Psychrobacter sp. WB2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 385545..396243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS82_RS01705 (QJS82_01705) uvrA 385545..388451 (-) 2907 WP_281491018.1 excinuclease ABC subunit UvrA -
  QJS82_RS01710 (QJS82_01710) - 389074..390438 (+) 1365 WP_281491019.1 MFS transporter -
  QJS82_RS01715 (QJS82_01715) ssb 390545..391243 (+) 699 WP_281491020.1 single-stranded DNA-binding protein Machinery gene
  QJS82_RS01720 (QJS82_01720) - 391563..391889 (+) 327 WP_227670477.1 H-NS family nucleoid-associated regulatory protein -
  QJS82_RS01725 (QJS82_01725) gspN 392097..392948 (+) 852 WP_281491021.1 type II secretion system protein N -
  QJS82_RS01730 (QJS82_01730) - 392949..393869 (+) 921 WP_281491022.1 type II secretion system protein N -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 24669.38 Da        Isoelectric Point: 5.9189

>NTDB_id=826214 QJS82_RS01715 WP_281491020.1 390545..391243(+) (ssb) [Psychrobacter sp. WB2]
MRGVNKVIIIGNLGADPEARQFSNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDPNGQDRYITEIRAEQMQMLDGATGGSGDAGGFGGQSSGQSQGGYGNQGGGYSNQGGQSSNQNQGQANQNNY
GQPANNQQSGYNQGGAPASQGMSQGNNQNSNQNSFNNQNAPAQNQFNKPAQAPAQSKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 699 bp        

>NTDB_id=826214 QJS82_RS01715 WP_281491020.1 390545..391243(+) (ssb) [Psychrobacter sp. WB2]
ATGCGCGGAGTTAATAAAGTTATCATCATCGGTAACCTTGGAGCAGACCCCGAGGCACGTCAATTCAGTAACGGCGGTAG
CGTGACCAATATCTCGGTTGCGACCTCAGAGCAGTGGACTGACAAGCAAAGCGGTGAGAAAAGAGAAGCAACGGAATGGC
ACCGCATTTCATTGTTTAATCGTTTAGGTGAAATCGCGGCACAGTATCTTCGTAAAGGCAGCAAGGTCTATATCGAAGGC
AGCTTGCGTACGCGTAAATATCAAGATCCCAATGGCCAAGACCGTTATATCACTGAGATTCGTGCTGAGCAAATGCAAAT
GCTTGACGGCGCGACCGGTGGTAGTGGTGACGCTGGTGGTTTTGGTGGTCAAAGCTCAGGCCAAAGTCAGGGTGGTTACG
GTAATCAGGGCGGCGGCTATAGCAATCAAGGCGGTCAAAGCTCAAATCAGAATCAGGGTCAAGCTAACCAAAATAATTAT
GGTCAACCAGCCAATAACCAGCAAAGTGGCTATAACCAAGGCGGCGCTCCAGCTTCTCAAGGTATGTCACAAGGCAATAA
CCAAAACAGCAATCAAAACAGCTTTAACAATCAAAATGCGCCAGCGCAGAATCAATTTAATAAGCCCGCTCAAGCACCAG
CACAGTCGAAGCCGACAGCGATGCCTGATGGCCCTGTAGATGATGATATTCCTTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.069

100

0.483
  ssb Neisseria gonorrhoeae MS11

36.481

100

0.366
  ssb Neisseria meningitidis MC58

37.118

98.707

0.366