Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SE116_RS07885 Genome accession   NZ_CP138362
Coordinates   1657971..1658573 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain V315     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1652971..1663573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE116_RS07865 (SE116_07865) yajC 1654467..1654727 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SE116_RS07870 (SE116_07870) tgt 1654746..1655885 (-) 1140 WP_319161769.1 tRNA guanosine(34) transglycosylase Tgt -
  SE116_RS07875 (SE116_07875) queA 1655908..1656933 (-) 1026 WP_001019175.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SE116_RS07880 (SE116_07880) ruvB 1656935..1657939 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SE116_RS07885 (SE116_07885) ruvA 1657971..1658573 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  SE116_RS07890 (SE116_07890) - 1658587..1659042 (-) 456 WP_000368902.1 ACT domain-containing protein -
  SE116_RS07895 (SE116_07895) obgE 1659055..1660347 (-) 1293 WP_000496098.1 GTPase ObgE -
  SE116_RS07900 (SE116_07900) rpmA 1661099..1661383 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SE116_RS07905 (SE116_07905) - 1661395..1661715 (-) 321 WP_224107929.1 ribosomal-processing cysteine protease Prp -
  SE116_RS07910 (SE116_07910) rplU 1661721..1662029 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SE116_RS07915 (SE116_07915) mreD 1662574..1663104 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=825052 SE116_RS07885 WP_000271547.1 1657971..1658573(-) (ruvA) [Staphylococcus aureus strain V315]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=825052 SE116_RS07885 WP_000271547.1 1657971..1658573(-) (ruvA) [Staphylococcus aureus strain V315]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATACATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425