Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   SE146_RS11145 Genome accession   NZ_CP138339
Coordinates   2114240..2114383 (-) Length   47 a.a.
NCBI ID   WP_003691943.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TH2288     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2109240..2119383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE146_RS11130 (SE146_11115) pilA 2110583..2111836 (+) 1254 WP_319078437.1 signal recognition particle-docking protein FtsY Machinery gene
  SE146_RS11135 (SE146_11120) - 2112101..2112868 (-) 768 WP_319078438.1 opacity family porin -
  SE146_RS11140 (SE146_11125) - 2113372..2113871 (-) 500 Protein_2148 pilin -
  SE146_RS11145 (SE146_11130) pilE 2114240..2114383 (-) 144 WP_003691943.1 hypothetical protein Machinery gene
  SE146_RS11150 (SE146_11135) - 2114848..2115168 (-) 321 Protein_2150 pilin -
  SE146_RS11155 (SE146_11140) - 2115134..2115586 (-) 453 Protein_2151 pilin -
  SE146_RS11160 (SE146_11145) lpxC 2115715..2116638 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  SE146_RS11170 (SE146_11155) pilE 2117305..2117745 (-) 441 WP_319078439.1 pilin Machinery gene
  SE146_RS11175 (SE146_11160) - 2117841..2118280 (-) 440 Protein_2154 pilin -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5034.54 Da        Isoelectric Point: 7.2428

>NTDB_id=824825 SE146_RS11145 WP_003691943.1 2114240..2114383(-) (pilE) [Neisseria gonorrhoeae strain TH2288]
MTGFNDAAGNDKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=824825 SE146_RS11145 WP_003691943.1 2114240..2114383(-) (pilE) [Neisseria gonorrhoeae strain TH2288]
ATGACGGGATTTAATGATGCCGCCGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447