Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QJR30_RS06900 Genome accession   NZ_CP124295
Coordinates   1415497..1417356 (+) Length   619 a.a.
NCBI ID   WP_330375198.1    Uniprot ID   -
Organism   Paraclostridium sordellii strain C116     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1410497..1422356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR30_RS06875 (QJR30_06870) - 1411456..1411830 (+) 375 WP_021128308.1 hypothetical protein -
  QJR30_RS06880 (QJR30_06875) - 1411896..1412303 (+) 408 WP_055339082.1 hypothetical protein -
  QJR30_RS06885 (QJR30_06880) - 1412473..1412661 (+) 189 WP_055339083.1 ferredoxin -
  QJR30_RS06890 (QJR30_06885) - 1412704..1413147 (-) 444 WP_055339084.1 MarR family transcriptional regulator -
  QJR30_RS06895 (QJR30_06890) - 1413300..1415504 (+) 2205 WP_055339085.1 ABC transporter ATP-binding protein -
  QJR30_RS06900 (QJR30_06895) rcrQ 1415497..1417356 (+) 1860 WP_330375198.1 ABC transporter ATP-binding protein Regulator
  QJR30_RS06905 (QJR30_06900) cspD 1417462..1417665 (+) 204 WP_055339086.1 cold-shock protein CspD -
  QJR30_RS06910 (QJR30_06905) asnB 1417803..1419704 (+) 1902 WP_338659704.1 asparagine synthase (glutamine-hydrolyzing) -
  QJR30_RS06915 (QJR30_06910) - 1419724..1420413 (+) 690 WP_021128302.1 response regulator transcription factor -
  QJR30_RS06920 (QJR30_06915) - 1420416..1421870 (+) 1455 WP_055339088.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68516.79 Da        Isoelectric Point: 5.3022

>NTDB_id=824824 QJR30_RS06900 WP_330375198.1 1415497..1417356(+) (rcrQ) [Paraclostridium sordellii strain C116]
MANNKKTMPKGPGMGGPKGMQGGEKAKDFKGTMKNLFNYLKPYRLSILIVIIFAIGSSAFSIVGPKVLGNATTEIFEGVV
RKIGGEGNGGIDFNYIGKVLGILLGLYLISALFSYVQSFIMSGISQKVSYKLRKEISEKINRMPLSYFDKKTHGEVLSRV
TNDIDTLSQNLNQTMTQVITAVTTVIGVLIMMISISWQMTIVALLILPISGILISVVVKKSQSHFKSQQEYLGHVNGQVE
ETYGGHNIVKAFNGEEDAINEFNELNDKLYESAWKSQFLSGMMMPMMSFIGNIGYVLVSILGGYFTIKKTIEVGDILSFI
QYVRSFNQPIAQTAQVANIMQSMAAAAERAFEFLDEDEEVQTSENPVSVENIEGNVSFDHVNFGYSEDKIIINNFTTNIK
SGQKVAIVGPTGAGKTTIVKLLMRFYDVNKGAILIDGHNIKDFNRSDLRSLFGMVLQDTWLFNGSIMENIRYSKLNASDE
EVIEAAKSAHVDHFVKTLSDGYKMELNEEANNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMENLME
GRTSFIIAHRLSTIKDADLILVMKDGDIVEQGSHDELLEKGGFYSSLYNSQFEECDEVC

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=824824 QJR30_RS06900 WP_330375198.1 1415497..1417356(+) (rcrQ) [Paraclostridium sordellii strain C116]
ATGGCTAATAATAAAAAAACTATGCCAAAAGGCCCAGGAATGGGTGGACCTAAAGGCATGCAAGGTGGAGAAAAAGCAAA
AGATTTTAAAGGTACTATGAAAAATCTTTTCAACTATTTAAAACCATATAGATTATCTATATTAATAGTTATTATATTTG
CAATAGGGAGTTCAGCATTCTCTATTGTAGGACCTAAAGTATTAGGAAATGCTACTACAGAAATTTTTGAGGGAGTAGTA
AGAAAAATTGGTGGAGAAGGTAATGGAGGAATAGATTTTAATTATATAGGTAAGGTTCTTGGAATACTTTTAGGACTTTA
TTTAATTAGTGCATTATTTTCCTATGTTCAGTCATTTATCATGTCTGGGATATCACAAAAGGTATCATATAAGTTAAGAA
AAGAGATATCAGAAAAAATAAATCGTATGCCACTATCATATTTTGATAAGAAAACTCATGGAGAAGTTTTATCTAGGGTG
ACAAATGATATAGATACATTAAGTCAAAACTTAAATCAAACTATGACTCAAGTTATAACTGCTGTTACTACTGTAATAGG
TGTACTTATAATGATGATATCTATAAGTTGGCAAATGACTATAGTGGCATTATTAATACTTCCTATTTCAGGAATATTAA
TATCTGTAGTTGTAAAAAAATCTCAAAGTCATTTTAAATCTCAACAAGAGTACTTAGGTCATGTAAATGGTCAAGTAGAA
GAGACTTATGGAGGACATAATATAGTAAAGGCTTTTAATGGAGAAGAAGATGCAATAAATGAATTTAATGAACTTAATGA
TAAATTATATGAATCAGCATGGAAATCTCAATTCTTATCAGGAATGATGATGCCTATGATGAGTTTTATAGGTAATATAG
GATATGTTTTAGTATCTATATTAGGTGGATACTTTACAATTAAAAAGACCATAGAAGTAGGAGATATACTATCTTTCATA
CAATATGTAAGAAGTTTTAACCAACCAATAGCACAAACTGCTCAGGTTGCAAATATAATGCAATCTATGGCCGCAGCAGC
TGAGAGAGCATTTGAATTTTTAGATGAAGATGAAGAAGTTCAAACAAGCGAAAATCCAGTAAGTGTTGAAAATATAGAAG
GAAATGTAAGTTTTGACCATGTAAACTTTGGATACAGTGAAGATAAAATAATCATAAATAACTTTACAACTAATATAAAA
TCTGGTCAAAAAGTAGCTATAGTTGGACCAACAGGTGCAGGTAAAACTACAATAGTTAAATTATTAATGCGTTTTTATGA
TGTAAACAAAGGAGCTATATTAATAGATGGACATAATATAAAAGACTTCAATAGAAGTGACTTGCGTAGTCTATTTGGAA
TGGTTCTTCAAGATACATGGTTATTTAATGGAAGTATAATGGAAAATATAAGATATTCAAAGCTTAATGCAAGTGATGAA
GAAGTTATAGAGGCTGCAAAATCAGCACATGTAGATCACTTTGTAAAGACTCTTTCAGATGGATATAAAATGGAATTAAA
TGAAGAGGCTAATAATGTTTCACAAGGACAAAAACAACTTTTAACTATAGCTAGAGCTATTTTAGCAGATCCTAAAATAC
TTATATTAGATGAAGCTACAAGTTCTGTTGATACTCGTACAGAAGTACTTATACAAAAAGCTATGGAAAATCTTATGGAA
GGCAGAACTAGCTTTATAATAGCTCATAGACTTTCAACTATAAAAGATGCTGATTTAATACTTGTTATGAAGGATGGAGA
TATAGTAGAACAAGGTAGTCATGATGAGTTATTAGAAAAGGGCGGATTCTATTCATCTTTATACAATAGTCAGTTTGAAG
AATGCGATGAAGTTTGTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(47-329)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.111

94.507

0.483