Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   SD207_RS04615 Genome accession   NZ_CP138324
Coordinates   975368..977389 (+) Length   673 a.a.
NCBI ID   WP_001004983.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JBAB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 970368..982389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS04595 (SD207_04595) - 971135..972364 (-) 1230 WP_000383199.1 pyridoxal phosphate-dependent aminotransferase -
  SD207_RS04600 (SD207_04600) - 972572..972751 (+) 180 WP_000139632.1 hypothetical protein -
  SD207_RS04605 (SD207_04605) - 972786..974222 (-) 1437 WP_000448849.1 diguanylate cyclase domain-containing protein -
  SD207_RS04610 (SD207_04610) - 974397..975188 (-) 792 WP_002047033.1 hypothetical protein -
  SD207_RS04615 (SD207_04615) uvrB 975368..977389 (+) 2022 WP_001004983.1 excinuclease ABC subunit UvrB Machinery gene
  SD207_RS04620 (SD207_04620) - 977481..978068 (+) 588 WP_000885644.1 lipocalin family protein -
  SD207_RS04625 (SD207_04625) rarD 978177..979124 (+) 948 WP_262093897.1 EamA family transporter RarD -
  SD207_RS04630 (SD207_04630) - 979341..980798 (+) 1458 WP_000031228.1 glyceraldehyde-3-phosphate dehydrogenase -
  SD207_RS04635 (SD207_04635) - 980948..981682 (+) 735 WP_001183836.1 hypothetical protein -
  SD207_RS04640 (SD207_04640) - 981694..982368 (+) 675 WP_000468065.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77278.03 Da        Isoelectric Point: 5.3381

>NTDB_id=824604 SD207_RS04615 WP_001004983.1 975368..977389(+) (uvrB) [Acinetobacter baumannii strain JBAB]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAR
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADTITD
SMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVLSDDQIDEKVLEQAQALSADERHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=824604 SD207_RS04615 WP_001004983.1 975368..977389(+) (uvrB) [Acinetobacter baumannii strain JBAB]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
GAATGGTATCGAAAAGGGTTTTCGTAATCAGTTACTGCTAGGCGTGACCGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACTCAGCGTCCGACGATTGTGATGGCGCATAATAAGACCTTGGCAGCCCAGCTCTATGGTGAGTTTAAA
GCTTTCTTCCCAAACAATGCAGTTGAGTATTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCGTC
AGATACATTTATTGAAAAAGACGCGGCAATTAATGACCATATTGACCAGATGCGATTATCGGCAACGCGTGCTTTGTTAG
AACGTCGTGATGCGATTATTGTTGCTTCTGTTTCGGCCATTTATGGTTTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTCCAAGGTGACCGAGTAAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACGCGTAATGA
GCTTGAATTCTTACGTGGTACGTATCGTATCCGTGGTGAAATTATTGATATTTTCCCGGCAGAATCCGACCAACATGCGA
TTCGTATTGAACTCTTTGATGACGAAGTAGACTCAATTCGCTGGTTTGATCCGCTGACCGGTAAAATGGTCCGCAAAGTA
CCACGTGTCACGATTTACCCGAAAAGCCATTATGTGACGCCAAAAGACAACCTAACACGCGCTATCGATACCATTAAGGA
TGAATTGCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTACTCGAAGCGCAGCGTATCGAGCAACGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGGTACACCAATGGTATCGAAAACTACTCACGTCATTTATCGGGACGACCGGCA
GGTGAAGCACCACCGACCTTATTTGACTATGTACCTGAAGATGCCTTACTTATTATTGATGAGTCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCGCGTAAAGAAAACTTGGTGAATTACGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAGCGTATTGTTCCGACCACTATTTTTGTGAGTGCCACACCAGCTAGA
TATGAACTGGAAAAATCAGAACAAGTGGTTGAGCAGGTTGTTCGACCAACAGGCTTGATTGATCCTGAAATTGAAGTTCG
TCCGGTGCTTACCCAAGTCGATGATGTTCTTTCTGAGATCAATATTCGTAAAAACTTAAATGAGCGTGTATTGGTAACGA
CTTTAACCAAGCGTATGGCGGAAGATTTAACTTCTTATTTAAAAGAATATGGCGTTAAGGTTGCTTATCTGCACTCGGAT
ATTGATACAGTTGAGCGTGTCAAAATTATTCATGAATTACGTACAGGCGTATTTGATGTACTAGTGGGTATTAACTTGCT
GCGAGAAGGCTTAGATATGCCGGAAGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAAGGTTTCTTACGTTCTGAGC
GTTCGCTTATTCAGACGATTGGTCGTGCTGCGAGAAATGTGAAAGGTAAAGCAATTTTATATGCTGATACAATCACTGAT
TCTATGCGAAAGGCAATTGATGAGACAGAGCGCCGACGTGCAAAACAAATCGAGTTTAATGAGCAGCATGGTATTACGCC
ACGTAGTGCAGTTCGTCAGGCTGTGAAAGAAATTGATACGGGTGAAGTACTTTCTGATGATCAGATTGATGAGAAAGTAC
TAGAGCAGGCACAAGCACTTAGCGCAGATGAACGACATATTCTTTCTGACCCTAAATTGTTTAGTAAGCACATTACTAAG
CTAGAGAAAGAAATGTTAAAGGCGTCGAAGGATTTACAATTCGAGCAAGCGGCGCGTATTCGTGATGAAATTGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae R6

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae D39

57.997

99.406

0.577