Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SC043_RS04365 Genome accession   NZ_CP138309
Coordinates   838232..839230 (+) Length   332 a.a.
NCBI ID   WP_003129447.1    Uniprot ID   -
Organism   Lactococcus lactis strain B26     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 833232..844230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC043_RS04350 (SC043_04350) - 833492..834646 (+) 1155 WP_021214413.1 class I SAM-dependent RNA methyltransferase -
  SC043_RS04355 (SC043_04355) - 834794..836800 (+) 2007 WP_010906077.1 cell division site-positioning protein MapZ family protein -
  SC043_RS04360 (SC043_04360) - 836929..838017 (-) 1089 WP_010906076.1 Xaa-Pro peptidase family protein -
  SC043_RS04365 (SC043_04365) ccpA 838232..839230 (+) 999 WP_003129447.1 catabolite control protein A Regulator
  SC043_RS04370 (SC043_04370) - 839368..840333 (+) 966 WP_003129446.1 NAD(P)/FAD-dependent oxidoreductase -
  SC043_RS04375 (SC043_04375) - 840493..841053 (+) 561 WP_003129445.1 CvpA family protein -
  SC043_RS04380 (SC043_04380) mutS/mutS2 841098..843428 (+) 2331 WP_003129443.1 endonuclease MutS2 Machinery gene
  SC043_RS04385 (SC043_04385) trxA 843525..843839 (+) 315 WP_003129442.1 thioredoxin -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36602.71 Da        Isoelectric Point: 4.9196

>NTDB_id=824528 SC043_RS04365 WP_003129447.1 838232..839230(+) (ccpA) [Lactococcus lactis strain B26]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=824528 SC043_RS04365 WP_003129447.1 838232..839230(+) (ccpA) [Lactococcus lactis strain B26]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTCGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGCGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGAACGCATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  ccpA Streptococcus pneumoniae D39

57.402

99.699

0.572
  ccpA Streptococcus gordonii str. Challis substr. CH1

57.1

99.699

0.569