Detailed information NTG0824307

Bioinformatically predicted

Overview

• Name: uvrB
• Type: Machinery gene
• Locus tag: R3F74_RS06060
• Genome accession: NZ_CP138298
• Coordinates: 1269596..1272553 (-)
• Length: 985 a.a.
• NCBI ID: WP_080704018.1
• Uniprot ID: -
• Organism: Bradyrhizobium japonicum strain CNPSo 24
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1264596..1277553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3F74_RS06025 (R3F74_06030)	-	1265187..1265333 (+)	147	WP_014492017.1	hypothetical protein	-
R3F74_RS06030 (R3F74_06035)	-	1265376..1265513 (-)	138	WP_014492018.1	hypothetical protein	-
R3F74_RS06035 (R3F74_06040)	-	1265851..1266273 (-)	423	WP_014492019.1	hypothetical protein	-
R3F74_RS06040 (R3F74_06045)	-	1266526..1267452 (-)	927	WP_051664833.1	hypothetical protein	-
R3F74_RS06045 (R3F74_06050)	-	1267836..1268276 (-)	441	WP_028158003.1	nuclear transport factor 2 family protein	-
R3F74_RS06050 (R3F74_06055)	-	1268515..1268967 (-)	453	WP_014492022.1	nuclear transport factor 2 family protein	-
R3F74_RS06055 (R3F74_06060)	-	1269262..1269498 (+)	237	WP_014492023.1	hypothetical protein	-
R3F74_RS06060 (R3F74_06065)	uvrB	1269596..1272553 (-)	2958	WP_080704018.1	excinuclease ABC subunit UvrB	Machinery gene
R3F74_RS06065 (R3F74_06070)	-	1272643..1272873 (-)	231	WP_014492025.1	hypothetical protein	-
R3F74_RS06070 (R3F74_06075)	-	1272928..1273155 (-)	228	WP_014492026.1	hypothetical protein	-
R3F74_RS06075 (R3F74_06080)	-	1273279..1274196 (-)	918	WP_028151584.1	LysR substrate-binding domain-containing protein	-
R3F74_RS06080 (R3F74_06085)	-	1274505..1275284 (+)	780	WP_038932181.1	sulfite exporter TauE/SafE family protein	-
R3F74_RS06085 (R3F74_06090)	-	1275281..1275511 (+)	231	WP_014492029.1	hypothetical protein	-
R3F74_RS06090 (R3F74_06095)	-	1275764..1276462 (+)	699	WP_039153964.1	glutathione S-transferase family protein	-
R3F74_RS06095 (R3F74_06100)	-	1276525..1276740 (-)	216	WP_080704017.1	cysteine-rich CWC family protein	-

Sequence

Protein

• Length: 985 a.a.
• Molecular weight: 109004.06 Da
• Isoelectric Point: 6.3426

>NTDB_id=824307 R3F74_RS06060 WP_080704018.1 1269596..1272553(-) (uvrB) [Bradyrhizobium japonicum strain CNPSo 24]
MAKKPAPPKSPKSKAPNSKAHRPDVQPIGPALAELLNPAINRGDAGLGSGTGLQPPPDNSRDRRAGGEAAAHRARASTPK
EFPQDNAKPMPLRPNPQPPGARATTEGFEEAPQANYGTAATIPTLDPELARQLGLPTEEDDAEALARPPRTKMEALGVKA
TADALESLIREGRPEFRKDDGSTKVWTPHRPPRPEKSEGGVRFEIKSPYQPRGDQPTAIAELVEGIQRNDRSQVLLGVTG
SGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM
RHSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQADFTRGTFRVRGDVIDI
FPAHYEDRAWRVNLFGDTIETIEEFDPLTGHKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLHDQGRLLE
AQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRLPGEPPPTLFEYVPDNALVFADESHVTVPQIGGMFRGDFRRKATLA
EYGFRLPSCMDNRPLRFEEWDMMRPQTVAVSATPGGWELNESGGVFVEQVIRPTGLIDPPVNIRPARTQVDDLVGEVRAT
AQAGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILD
ADKEGFLRSETSLIQTIGRAARNVDGQVILYADQMTGSMERAIAETNRRREKQVEYNTANGITPESVKKQIGDILNSVYE
RDHVLVEVGGQDMTDDVISIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRATELAVVDDPTAKQRTVQVKAG
AYAGTKKYGDAANLPVSAMKKKTVSSALKASGGGSGSKVHKPHLDEMHGPESLPYRENPSLPSKPFGSTSRIIQPTDSRQ
SGPEFGPAPKSTGGAPGRRGGWKKR

Nucleotide

• Length: 2958 bp

>NTDB_id=824307 R3F74_RS06060 WP_080704018.1 1269596..1272553(-) (uvrB) [Bradyrhizobium japonicum strain CNPSo 24]
ATGGCGAAGAAACCTGCTCCCCCGAAATCCCCCAAATCCAAGGCCCCGAACTCCAAGGCGCACCGCCCTGACGTGCAGCC
GATCGGGCCGGCGCTGGCCGAACTTCTGAATCCCGCGATCAATCGCGGCGATGCCGGGCTGGGATCGGGCACCGGCCTGC
AGCCGCCGCCGGACAATTCGCGCGACCGCCGCGCCGGGGGCGAGGCTGCCGCGCATCGCGCGCGCGCCTCGACGCCGAAA
GAGTTTCCGCAGGATAATGCCAAGCCGATGCCGTTGCGGCCCAATCCGCAGCCGCCGGGCGCGCGCGCGACCACCGAAGG
CTTTGAAGAAGCGCCGCAGGCCAATTACGGCACTGCCGCCACGATCCCGACGCTCGATCCGGAACTGGCGCGACAGCTCG
GACTTCCGACCGAAGAGGACGATGCCGAGGCGCTGGCGCGGCCACCGCGCACCAAGATGGAGGCGCTCGGCGTCAAGGCG
ACCGCCGACGCGCTGGAATCGCTGATCCGCGAGGGCCGGCCGGAATTCCGCAAGGACGACGGCTCCACCAAGGTGTGGAC
CCCGCACCGGCCGCCGCGCCCGGAGAAGTCCGAAGGCGGCGTGCGCTTCGAGATCAAATCGCCCTACCAGCCGCGCGGCG
ACCAGCCGACCGCGATCGCCGAACTCGTCGAAGGCATCCAGCGTAACGACCGCAGCCAAGTGCTGCTCGGCGTCACCGGC
TCCGGCAAGACCTACACCATGGCCAAGGTGATCGAGGCGACGCAGCGGCCCGCCATCATCCTTGCGCCGAACAAGACGCT
CGCCGCCCAGCTCTATGGCGAGTTCAAGAGCTTTTTCCCCGACAACGCGGTCGAGTATTTCGTCAGCTATTACGACTACT
ACCAGCCGGAAGCCTACGTCCCGCGCACCGACACCTACATCGAAAAGGATTCTTCGATCAACGAGCAGATCGACCGCATG
CGCCACTCGGCGACGCGCGCGCTGCTCGAACGCGACGACGTCATCATCGTGGCGTCGGTGTCCTGCATCTACGGTATCGG
CTCGGTCGAGACCTACACCGCGATGACCTTCGCGCTGAAGAAGGGCGAGCGCATCGATCAGCGCCAGCTGATCGCCGACC
TCGTCGCCCTCCAGTACAAGCGCACCCAGGCCGATTTTACCCGCGGCACGTTTCGCGTACGCGGCGACGTCATCGACATC
TTCCCGGCGCACTATGAAGACCGGGCCTGGCGCGTGAACCTGTTCGGCGACACCATCGAGACCATCGAGGAGTTCGATCC
GCTCACCGGCCACAAGCAGGACGAGCTCGAATTCATCAAGATGTATGCCAACTCGCACTACGTGACGCCGCGCCCGACGC
TGGTGCAGGCGATCAAGTCGATCAAATCGGAGCTGAAGCAGCGGCTCGACCAACTGCACGACCAGGGCCGTCTTCTGGAA
GCGCAGCGGCTGGAGCAGCGCACCACCTTCGATCTCGAGATGATGGAGGCGACGGGAAGCTGCGCCGGCATCGAGAACTA
TTCGCGCTATCTCACCGGGCGCCTGCCCGGCGAGCCGCCGCCGACGCTGTTCGAATACGTCCCCGACAACGCGCTGGTGT
TCGCCGACGAGAGCCACGTCACCGTGCCGCAGATCGGCGGCATGTTCCGCGGCGACTTCCGCCGCAAGGCGACGCTGGCC
GAATACGGCTTCCGTTTGCCCTCCTGCATGGACAACCGCCCGCTCCGCTTCGAGGAGTGGGACATGATGCGGCCGCAGAC
GGTTGCGGTGTCGGCGACGCCGGGCGGCTGGGAGCTGAACGAGAGCGGTGGCGTGTTCGTCGAGCAGGTGATCAGACCGA
CGGGGCTCATTGATCCTCCCGTTAACATCCGCCCCGCCCGCACCCAGGTCGACGATCTCGTCGGCGAGGTCCGTGCCACC
GCCCAGGCCGGCTACCGCTCGCTGATCACCGTGCTGACCAAGCGCATGGCGGAGGACCTCACCGAATATCTGCATGAGCA
GGGGATTCGCGTCCGCTACATGCACTCCGATATCGACACCATCGAGCGCATCGAGATCATCCGGGATCTCCGCCTCGGCG
CGTTCGACGCGCTGGTCGGCATCAACCTCTTGCGCGAAGGCCTCGACATTCCCGAATGCGCGCTGGTCGCGATTCTGGAC
GCCGACAAGGAAGGTTTTTTGCGCAGTGAAACGTCCTTGATTCAGACCATCGGCCGTGCCGCGCGCAACGTCGACGGCCA
GGTGATCCTCTACGCCGACCAGATGACGGGCTCGATGGAGCGCGCCATCGCGGAAACCAACCGGCGCCGCGAAAAGCAGG
TCGAGTACAACACCGCCAACGGCATCACGCCGGAGAGTGTGAAGAAGCAGATCGGCGACATCCTCAACTCCGTCTACGAG
CGCGACCACGTGCTGGTCGAGGTCGGCGGCCAAGACATGACCGACGACGTCATTTCGATCGGTCACAATTTCGAAGCCGT
GCTCGCCGATCTCGAAACCCGTATGCGCGAGGCCGCCGCCGATCTGAACTTCGAGGAAGCCGCCCGCCTCCGCGACGAAG
TCAAGCGCCTGCGCGCCACGGAGCTCGCGGTGGTCGACGACCCCACCGCCAAGCAACGCACCGTGCAAGTCAAGGCCGGC
GCCTACGCCGGCACCAAGAAGTACGGCGACGCCGCGAATTTGCCCGTCAGCGCCATGAAGAAGAAAACCGTGAGCTCCGC
GCTGAAAGCCAGCGGCGGCGGCAGCGGCTCGAAGGTGCACAAGCCGCATCTCGACGAGATGCACGGGCCGGAGTCGTTGC
CCTACCGCGAAAACCCGAGCCTGCCGTCAAAACCGTTCGGCAGCACGAGCCGGATCATCCAGCCGACGGACTCACGGCAG
TCGGGACCGGAGTTCGGGCCCGCGCCGAAGTCGACGGGCGGGGCGCCGGGGCGGCGGGGTGGGTGGAAGAAGAGGTAG

Domains

Predicted by InterProScan.

• UvrB/uvrC motif (UVR) (826-859)

• Type III restriction enzyme, res subunit (ResIII) (210-337)

• UvrB interaction domain (UvrB_inter) (358-447)

• Ultra-violet resistance protein B (UvrB) (750-791)

• Helicase conserved C-terminal domain (Helicase_C) (641-742)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrB	Streptococcus pneumoniae TIGR4	54.381	67.208	0.365
uvrB	Streptococcus pneumoniae R6	54.381	67.208	0.365
uvrB	Streptococcus pneumoniae D39	54.381	67.208	0.365