Detailed information NTG0823984

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QFW95_RS23485
• Genome accession: NZ_CP124219
• Coordinates: 5259537..5260883 (+)
• Length: 448 a.a.
• NCBI ID: WP_076386371.1
• Uniprot ID: -
• Organism: Pseudomonas sp. P13
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5254537..5265883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFW95_RS23460	pgeF	5254749..5255474 (-)	726	WP_076386367.1	peptidoglycan editing factor PgeF	-
QFW95_RS23465	rluD	5255471..5256433 (-)	963	WP_047229873.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
QFW95_RS23470	-	5256585..5257601 (+)	1017	WP_047229874.1	outer membrane protein assembly factor BamD	-
QFW95_RS23475	-	5257725..5257958 (+)	234	WP_047229875.1	PP0621 family protein	-
QFW95_RS23480	pilS	5257948..5259540 (+)	1593	WP_281459547.1	ATP-binding protein	Regulator
QFW95_RS23485	pilR	5259537..5260883 (+)	1347	WP_076386371.1	sigma-54 dependent transcriptional regulator	Regulator
QFW95_RS23490	-	5260934..5261299 (-)	366	WP_281459548.1	DUF6124 family protein	-
QFW95_RS23495	thiO	5262636..5263736 (-)	1101	WP_047230179.1	glycine oxidase ThiO	-
QFW95_RS23500	-	5263792..5264193 (-)	402	WP_076386375.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50223.65 Da
• Isoelectric Point: 6.3576

>NTDB_id=823984 QFW95_RS23485 WP_076386371.1 5259537..5260883(+) (pilR) [Pseudomonas sp. P13]
MTTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAENLAQARALLAEDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPSVAIPAASIERCLLGDSPPMHNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSAQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVTAGRFRQDLYYRLNVIELRVPPLRERREDIESLA
NHTLQRLAANTGSPAVKLHPQALDALRNYRFPGNVRELENMLERAYTLCEHQLIEAHDLRLAEGISTTDAGSPDLMRVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=823984 QFW95_RS23485 WP_076386371.1 5259537..5260883(+) (pilR) [Pseudomonas sp. P13]
TTGACTACGCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATTACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCGAGAACCTTGCCCAGGCCCGGGCCCTGCTGGCTGAAGACACCTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACTGGCCTGGAGTTGGTGCAACATATCCAGCAACGCTACCCGCAATTGCCC
GTGGCAATGATCACCGCCTACGGGAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGTGAGCTGGTCACCAGCGCATTACGCCTGCCGTCGGTCGCCATCCCGGCGGCGTCCA
TCGAGCGCTGTCTGCTGGGCGATTCCCCGCCGATGCACAACGTCCGCAAACAAATCGAAAAACTCGCTCGCAGTCAGGCG
CCGGTCTACATCAGCGGGGAATCGGGTTGCGGCAAGGAACTGGTCGCCCGGTTGATCCATGAGCAAGGCCCGCGTTCCGC
CCAGCGTTTTGTGCCGGTCAACTGTGGGGCGATTCCCACTGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGACTATTCCAGGCCGCTCACGGCGGGACCTTGTTCCTTGACGAAGTGGCC
GACCTGCCCCTGGCGATGCAAGTCAAATTGCTGCGCGCCATCCAGGAAAAAGCCGTGCGGGCCGTTGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGAATTCTTTGCGCCACCCACAAGGACCTGGACGCCGAAGTCACCGCCGGGCGCTTTCGCCAGG
ACCTGTACTATCGACTCAACGTCATCGAACTGCGCGTCCCGCCGCTGCGCGAACGCCGCGAAGACATCGAATCGCTCGCC
AATCACACCCTCCAGCGCCTGGCCGCCAACACCGGTAGCCCCGCGGTCAAGCTCCATCCCCAAGCCCTGGACGCCCTTCG
AAACTACCGCTTCCCGGGCAATGTTCGGGAACTGGAAAACATGCTCGAACGCGCCTACACCCTTTGCGAGCACCAGTTGA
TCGAAGCCCACGACCTGCGCCTGGCCGAGGGCATCAGCACCACCGACGCAGGCAGCCCCGACCTGATGCGGGTCGATAAC
CTGGAAGACTATCTGGAGGACGTCGAACGCAAACTCATCCTCCAGGCTTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.604	99.107	0.779
pilR	Acinetobacter baumannii strain A118	49.891	100	0.511