Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QFW95_RS23480 Genome accession   NZ_CP124219
Coordinates   5257948..5259540 (+) Length   530 a.a.
NCBI ID   WP_281459547.1    Uniprot ID   -
Organism   Pseudomonas sp. P13     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5252948..5264540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW95_RS23460 pgeF 5254749..5255474 (-) 726 WP_076386367.1 peptidoglycan editing factor PgeF -
  QFW95_RS23465 rluD 5255471..5256433 (-) 963 WP_047229873.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QFW95_RS23470 - 5256585..5257601 (+) 1017 WP_047229874.1 outer membrane protein assembly factor BamD -
  QFW95_RS23475 - 5257725..5257958 (+) 234 WP_047229875.1 PP0621 family protein -
  QFW95_RS23480 pilS 5257948..5259540 (+) 1593 WP_281459547.1 ATP-binding protein Regulator
  QFW95_RS23485 pilR 5259537..5260883 (+) 1347 WP_076386371.1 sigma-54 dependent transcriptional regulator Regulator
  QFW95_RS23490 - 5260934..5261299 (-) 366 WP_281459548.1 DUF6124 family protein -
  QFW95_RS23495 thiO 5262636..5263736 (-) 1101 WP_047230179.1 glycine oxidase ThiO -
  QFW95_RS23500 - 5263792..5264193 (-) 402 WP_076386375.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58930.77 Da        Isoelectric Point: 7.2517

>NTDB_id=823983 QFW95_RS23480 WP_281459547.1 5257948..5259540(+) (pilS) [Pseudomonas sp. P13]
MTAEQASSPRVKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARL
FGLALTDVLLLSWLFYAAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATLGIVGSSFFLDLSDSSRPSSYLQAGTL
GALCFAAALLVQGLTRRLEASEILAEQRASEVVGLEALNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLVGQRL
DDCSGALVERLQLWLNNPSLRPQSLTINGTGLTLQPSFIALGHHDQHQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAH
EIRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRIWLDQFVRQARENAAG
HQHLHLSIDPGDYLTLMDPDQLTQVLDNLLRNAWRHSAMAHEEAEVWLKLFIDPHSQLSMLDIIDNGPGVTPDQQAHLFE
PFFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=823983 QFW95_RS23480 WP_281459547.1 5257948..5259540(+) (pilS) [Pseudomonas sp. P13]
GTGACCGCTGAGCAAGCCTCAAGCCCTCGCGTCAAACAGGCGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGTCTAAG
CATCGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGATTTGCTGC
GCAGCGGCAGCTGGTTGTATCTGGTGCTGAATATCCTGCTGGTGGTGTTTCTTGAAAATACCCGCCGCCCAGCCCGGCTG
TTCGGCCTGGCTCTGACCGACGTGCTGTTGTTGTCGTGGCTGTTCTACGCTGCCGGCGGCGCCCCCAGCGCCATCGGCAA
CCTGCTCATCGTCTCGGTGGCCATCGGCAATACGTTGTTGCGAGGCCGAATTGGCCTGTTGATTGCAGCTGTCGCTACGC
TGGGCATCGTCGGGTCGAGCTTCTTCCTTGACCTCAGCGATTCGAGCCGTCCCAGCAGTTATCTGCAGGCCGGTACCCTG
GGGGCCTTGTGTTTTGCCGCCGCGCTGCTGGTGCAAGGCCTGACCCGACGCCTGGAAGCCAGTGAAATCCTCGCCGAACA
ACGGGCCAGCGAAGTAGTCGGTCTGGAAGCGCTCAACGCATTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCG
ATCGCCAGCGCCGGGTGCAATTGGCTAACGAAAGCGCATTGAACCTGTTGGGCATGCACGACCTGGTCGGCCAGCGGCTC
GACGACTGCTCCGGCGCCCTGGTGGAGCGGCTGCAGCTGTGGTTGAACAACCCCAGCCTGCGTCCGCAAAGCCTGACCAT
TAACGGCACCGGCCTGACCTTGCAACCGAGTTTCATTGCCCTGGGGCATCACGATCAGCATCAGATCCTGGTCTTCCTCG
AAGACCTGGCCCAAGTGGCCCAGCACGCCCAGCAGTTGAAACTCGCCTCCCTGGGGCGCCTCACCGCCGGTATCGCCCAT
GAAATCCGCAACCCGTTGGGGGCGATCAGCCATGCGGCGCAATTGCTGCGCGAGTCCGAGGAACTGAACGACGCAGATCG
GCGTCTGACGCAGATCATCCAGGATCACTCCCAACGAATGAACCGCGTCATTGAAAACGTCCTGCAACTGTCCCGCCGCC
AGCAGACCACGCCGCAGCGCCTGGATCTGCGGATCTGGCTCGACCAGTTCGTCCGACAGGCCCGGGAAAACGCGGCTGGG
CATCAGCACTTGCACCTGAGCATCGACCCGGGTGACTACCTCACGCTGATGGACCCCGATCAGTTGACCCAGGTGCTCGA
CAACCTGCTGCGCAACGCCTGGCGTCACAGCGCGATGGCCCATGAAGAGGCCGAGGTCTGGCTGAAGCTGTTCATCGATC
CCCACAGCCAGCTGTCCATGCTGGACATTATCGACAATGGCCCCGGCGTGACGCCGGACCAGCAAGCGCATTTGTTCGAA
CCTTTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCG
CCTAGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.618

97.736

0.592